Plant FIBer expression Database

Potri.006G089451 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G089451.1 pacid=42767054 polypeptide=Potri.006G089451.1.p locus=Potri.006G089451 ID=Potri.006G089451.1.v4.1 annot-version=v4.1
ATGAGAGCATATATGAAGAGATTCAACGAGGAAATGCTTAAGCTTGAAGATTTGATTGAACTTATAGCTTTGGAAGCCCTCATTAGTAGAGTGAGGGAAA
AACACTTGTGGAAGGAGTTGTATGCCCTACTAGATAGAAAGTTACTAAAAGTGAAGGAAGCCATGGAAAACTATATTCGAGTAAAGGAGACAAGTACATT
GTGCCACGATCCTCCTCATTTCTCTAGGGATAAACAGCTAGATAGGTCTTCTAAATGGGGTCACTCACCTAAAAAGGACCGCTCTCCTAAAAGGGATAAC
AATCCTAAGAGGGGTCAGAAAAAACTAATGAGAGAACATTTAAGCTATTTTAAAGTGCATACCTTTACACTAAACACCACCCTCATCTTAGTTCTTGTGG
CCATCTAA
AA sequence
>Potri.006G089451.1 pacid=42767054 polypeptide=Potri.006G089451.1.p locus=Potri.006G089451 ID=Potri.006G089451.1.v4.1 annot-version=v4.1
MRAYMKRFNEEMLKLEDLIELIALEALISRVREKHLWKELYALLDRKLLKVKEAMENYIRVKETSTLCHDPPHFSRDKQLDRSSKWGHSPKKDRSPKRDN
NPKRGQKKLMREHLSYFKVHTFTLNTTLILVLVAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G089451
[exp]
0 1
AT1G52190 Major facilitator superfamily ... Potri.012G087500
[exp]
1.41 0.9500
AT3G60330 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase... Potri.014G046300
[exp]
1.73 0.9378 Pt-HA1.5
AT1G17860 Kunitz family trypsin and prot... Potri.004G067600
[exp]
12.00 0.8792
AT5G40610 NAD-dependent glycerol-3-phosp... Potri.017G070900
[exp]
21.16 0.8146
AT3G54320 AP2_ERF ATWRI1, ASML1, ... WRINKLED 1, WRINKLED, ACTIVATO... Potri.010G092800
[exp]
26.03 0.8525
AT5G39160 RmlC-like cupins superfamily p... Potri.001G465100
[exp]
29.39 0.9274 GER2.31
AT2G38110 ATGPAT6, GPAT6 glycerol-3-phosphate acyltrans... Potri.016G063900
[exp]
29.74 0.9236
AT5G24090 ATCHIA chitinase A (.1) Potri.002G242000
[exp]
31.46 0.9211 Pt-CHI3.10
Potri.005G224300
[exp]
43.31 0.8965
AT3G44350 NAC ANAC061 NAC domain containing protein ... Potri.006G179800
[exp]
43.90 0.8934 NAC140

Potri.006G089451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.