Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06150 195 / 6e-53 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 193 / 9e-53 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 187 / 1e-51 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT2G31280 189 / 4e-51 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT5G53900 68 / 9e-12 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 65 / 6e-11 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT3G15240 63 / 3e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G24352 57 / 4e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222500 [exp] 291 / 3e-88 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 256 / 2e-75 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.003G144900 [exp] 220 / 3e-61 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 218 / 1e-60 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 211 / 2e-57 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 207 / 2e-56 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.014G024000 [exp] 74 / 8e-14 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.010G096400 [exp] 72 / 3e-13 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.011G116400 [exp] 72 / 3e-13 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013348 [exp] 215 / 2e-59 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10000609 [exp] 207 / 5e-57 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10010877 [exp] 202 / 3e-55 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033880 [exp] 186 / 9e-50 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033222 [exp] 183 / 7e-49 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10001527 [exp] 180 / 7e-48 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10003569 [exp] 71 / 1e-14 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10012986 [exp] 71 / 1e-12 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10029179 [exp] 68 / 8e-12 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10041936 [exp] 60 / 4e-09 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G090000.4 pacid=42769482 polypeptide=Potri.006G090000.4.p locus=Potri.006G090000 ID=Potri.006G090000.4.v4.1 annot-version=v4.1 ATGGGAACTACTGATCTGAGACAGCTGTTGGAGAGTCTTTGCAATAATTCAGACTGGAAATATGCTGTTCTTTGGAAGATGAGATATGGGAGCCCAATGA TTTTGACTTGGGAAGATGGATATTTTGATTGCCCAAAACCACGAGAACCTTTGCAAACTATATCCTCAGATGTTTACTGCAATGGTGGGAATGATCTAGC TTCTTCCCTCCGCGATGCGAGTGCGTCTAATGCTAACTTTGGGGGACATCAAATCGAACTTGTCGTGGCTGATATGTTGCACCTTCAGTATCCCTTAGGA GAGGGGGTTGTTGGTGAAGTGGCATATACAGGGGACCATTTCTGGCTTTCGTTCAACAATATTTTTTCTTGTGAAATGAGCAAGAATTTAGTTCCTGAGT TTCCAGAAGAATGGCTACTTCAGTTTGCATCAGGTATCAAGACTATTTTGCTGGTGCCTGTACTTCCACATGGAGTTTTGCAGCTTGGATCATTTGACGA GGTTGCTGAAGATATTCAAATAGTTGCCTATATTAAAGGTAGATTCAATGATCTTCACAGTACTAGAGAAAATGCAGTTCCTCTCACTTTAAAGAGGGAG TTTAAAGCTCAGTCTACATTAATCTCTTGTCCTGTTGAGCAATTAAATGCAACTTCAGCTATTTCCATTAGCCAAGTGAAAAGTGAAGATTCAAATTATT CAATACCTGTCAATAGTGTCAAGCTACATAAAGATGAGCAACCAGAAGTTTTCAAATGTGAAAGCAAAAATAATAGTCTATCGCCTATCTTTGCTGATGT GTCCCCTCCAAGTGAATCTCTAAGTGCCAGCCAACCGGGGATGGTTGAGAGTAAGATATTTGAACTCTCTTATCTGATGGATGAATTGCAAGCATATTCT GACTGTAATGAGTACAATGTGGGATGGTTTGGAGAACCCTTGGATGGGATGATGAATACTTATCCTACTGCAGATATGGTAGAGCAGTCATCTGGAGGCA TGGATGCCAATGATGTCTATCATAAAAATAGACAGAGTTTTCTTAGCTTTCCCAAAGGCAGTGAGTTGCATAAAGTACTTGGACCACCTTTTTTGAGCCA GACCAATGAAAAGACATGGGAACCATCTTTATTGGTGGAGGATAGTTGCAAGAGCTCAAATTTCATCTTCAGCGAAGATCACAGTGCAAGAATTGAGCCT TCTTTGTTTGCTAGAGAAGGTGAGGTTGAGTTTCTGCTGGAACCAGTGGCTGGCAATTCATATAGTAGTTCAGATAATGCGTCTTCTAACAGATCCCATA GTTTGAAGTCATCTGAAATGTTGTCAGGACACCTTCTTGCTACTTCTCAAAACCAATTTCAAACAAGAACCTTGGTGGGGGATGATTTGGCACCATGGAA CCATCTAGCATCTGTATGTATTTCTGGAAGTGGAAATACTGATACTACAGCTGCTTTAGATAGCATGATGAGTACAATTTTTGACCAGGAACAACAGGAA AAGGATCAAAGTTACAAGCACCCTTGGAAAGGCCAGAAGATGTCAAATGTGGCCAGAAGAAGGGCCAGACCCGGTGAAAACCAAAAGCCAAGGCCAAGGG ATAGGCAGCTGATCCAGGACCGGGTAAAGGAGCTGAGGGAGCTTGTCCCAAATGGTTCAAAGTGTAGCATTGATGGCCTCTTGGATCAAACCATAAAGCA CATGCAGTATTTAAGAAGTGTGACTGACCAGGCCGAGAAATTGAGGCAGTGGGTGCATCAAGAGGTTGCTGATCGCAAGAACTGCAGATTGTCTGAAACC AATGTGAATATCCAAAGTGGGAAAAGCTGGGCCTTTGAATTTGGAAATGATCTACAGATATGTCCTATTGTTGTGGAAGACCTTGCATACCCAGGACACC TCCTCATAGAGATGCTTTGCAATGATCGTGGCGTTTTCTTGGAGATAGCCCAGGTGATCCGCAGTCTAGATTTGACCATCCTGAAGGGCGTGATGGAAAG TCGATTAAGTAACACATGGGCTCATTTCATTGTTGAGGCTTGCAAAGGTTTCCATAGACTGGACATATTCTGGCCGCTGATGCAGCTTTTGCAGAGGAAA AGGAGTTCTATATCTGGCAAGATTTGA
AA sequence Show only first row Show all	>Potri.006G090000.4 pacid=42769482 polypeptide=Potri.006G090000.4.p locus=Potri.006G090000 ID=Potri.006G090000.4.v4.1 annot-version=v4.1 MGTTDLRQLLESLCNNSDWKYAVLWKMRYGSPMILTWEDGYFDCPKPREPLQTISSDVYCNGGNDLASSLRDASASNANFGGHQIELVVADMLHLQYPLG EGVVGEVAYTGDHFWLSFNNIFSCEMSKNLVPEFPEEWLLQFASGIKTILLVPVLPHGVLQLGSFDEVAEDIQIVAYIKGRFNDLHSTRENAVPLTLKRE FKAQSTLISCPVEQLNATSAISISQVKSEDSNYSIPVNSVKLHKDEQPEVFKCESKNNSLSPIFADVSPPSESLSASQPGMVESKIFELSYLMDELQAYS DCNEYNVGWFGEPLDGMMNTYPTADMVEQSSGGMDANDVYHKNRQSFLSFPKGSELHKVLGPPFLSQTNEKTWEPSLLVEDSCKSSNFIFSEDHSARIEP SLFAREGEVEFLLEPVAGNSYSSSDNASSNRSHSLKSSEMLSGHLLATSQNQFQTRTLVGDDLAPWNHLASVCISGSGNTDTTAALDSMMSTIFDQEQQE KDQSYKHPWKGQKMSNVARRRARPGENQKPRPRDRQLIQDRVKELRELVPNGSKCSIDGLLDQTIKHMQYLRSVTDQAEKLRQWVHQEVADRKNCRLSET NVNIQSGKSWAFEFGNDLQICPIVVEDLAYPGHLLIEMLCNDRGVFLEIAQVIRSLDLTILKGVMESRLSNTWAHFIVEACKGFHRLDIFWPLMQLLQRK RSSISGKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.006G090000 [exp]	0	1
AT3G53510		ABCG20	ATP-binding cassette G20, ABC-...		Potri.002G156900 [exp]	3.00	0.9559
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	8.94	0.9460
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.015G046800 [exp]	9.48	0.9352
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.008G144700 [exp]	10.29	0.8786	Pt-PSKR.2
AT3G58000			VQ motif-containing protein (....		Potri.009G024200 [exp]	12.32	0.9326
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	16.73	0.9278
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.016G104500 [exp]	18.16	0.9148
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	18.43	0.9325
AT5G44440			FAD-binding Berberine family p...		Potri.011G162666 [exp]	18.97	0.9230
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	20.63	0.9303

Compare expression of checked genes

Potri.006G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.