Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02070 783 / 0 Protein kinase family protein (.1) AT3G53840 610 / 0 Protein kinase superfamily protein (.1) AT1G79670 300 / 2e-92 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G79680 300 / 1e-91 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT5G66790 294 / 1e-90 Protein kinase superfamily protein (.1) AT1G69730 294 / 3e-89 Wall-associated kinase family protein (.1) AT1G16120 286 / 7e-87 WAKL1 wall associated kinase-like 1 (.1) AT2G23450 285 / 1e-86 Protein kinase superfamily protein (.1.2) AT1G16130 282 / 4e-85 WAKL2 wall associated kinase-like 2 (.1) AT1G21240 281 / 6e-85 WAK3 wall associated kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059900 [exp] 687 / 0 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.006G118500 [exp] 561 / 0 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.003G186100 [exp] 295 / 3e-90 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040756 [exp] 284 / 4e-90 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.002G075901 [exp] 287 / 1e-89 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1) Potri.003G186200 [exp] 291 / 2e-89 AT1G79680 510 / 2e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.005G203401 [exp] 283 / 2e-89 AT1G16120 402 / 1e-134 wall associated kinase-like 1 (.1) Potri.003G185732 [exp] 284 / 2e-88 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.003G185644 [exp] 288 / 6e-88 AT1G16260 536 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014387 [exp] 503 / 2e-171 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10008105 [exp] 294 / 4e-90 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 286 / 3e-87 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10032741 [exp] 274 / 2e-82 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 269 / 2e-80 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 265 / 2e-79 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10034085 [exp] 262 / 4e-78 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10021003 [exp] 248 / 5e-75 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003063 [exp] 253 / 1e-74 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10029132 [exp] 249 / 1e-73 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.006G090200.1 pacid=42767956 polypeptide=Potri.006G090200.1.p locus=Potri.006G090200 ID=Potri.006G090200.1.v4.1 annot-version=v4.1 ATGGAGAAGAGCATCCTATCAATGTTGATTCTTATGGTTACACTGTTATTATGTTCCTGGAGTGCCACAGCCCTGCAGCATTGTGGGAATTGTGGCCTTA CTCCGGTGCCATTTCCACTAAGCACTGGGCCAGATTGTGGCAACCAACAGTACAAGCTCAGGTGTTCTTTTGGAAAATTATGGTTTGATGCTCTAAATGG ATCATCCTACTTGATCGCGTCCATTAACCCAGTACTCCGACGGATAGTTATTAGACCTGCAAGCTTAGCAAATAAGATTTGCATCTCAAGTGATTTTCAT AGCCAAGGAATCCAGCTCAATCAAAATCTTCCCTTTAGCATCACTAATAGTAACACAATCTTGTTGCTTAATTGTAAAAATGAAATTTTGCACTTGAAAC CACCCATAGATTGTGCACCTGGTAGCATTTGTCATAACTATATTCAAGGGAACGCTGCAGCCTGTGCTAGTGCACCATTGTGTTGTACATTCAAGTCTAG TACAGGCTTACAGAGTGCATATATGATTAAGGTCTATGATGGAGGGTGTGCAGCATATCAGAGCTTTGTCAACTTGGATGTTAAGAAGGTGGGAATGATC AAGAAATGGCCTGAGCCTGGTGTGGAGATCGAATGGGCGTTGCCGGAGGAGCCAATTTGCAAGATCCCAGTAGACTGCAAGGACTTATTGTACTCAAAAT GTCTGCCTGATCCAATCAGCTTAGGGCAGAAAAGGTGCTTCTGTGATGCTGGGTTTAAATGGGACCCCATCAACGGATTGTGTCAAAATTTGAAGTGTCT TCCTGGAAAAGTTTGCAAAAAAAGAAAGAAAAAGACAGTGGTCTTTGCAGGTGCAGCCGTTGGAGCGGTTGCAGTCCTAGTCATGGTCCTAGGTGGTGGT CTATTCCTCAAGAAGCAAAATCGGTCAAAAAGAGCACAAAAGAATTTGATAAAAGAGCGAAAAGAGATGTTAAATGCCAAACATAGTGGAAAATCAGCCA GAATCTTTACGGGAAAGGAGATAACAAAAGCAACCAACAATTTCTCCAAAGACAACCTCATCGGTGCAGGTGGCTTTGGTGAGGTCTTCAAGGGCATTCT TGATGATGGAACTGTAACAGCTATCAAGCGAGCCAAGCTTGGAAACACCAAAGGCATCGATCAAGTTATTAACGAGGTTCGAATTCTTTGCCAGGTCAAT CACAGAAGCCTTGTAAGACTCCTGGGTTGTTGTGTCGAGCTTGAGCAACCTATCATGATTTATGAGTATATCCCTAATGGAACCCTCTTTGATCACCTTC ACTGTCACCATTCTGGCAAGTGGACTTCACTCAGCTGGCAACTAAGGCTCCGCATTGCATATCAAACTGCAGAAGGTCTAACCTATCTTCACTCTGCAGC CGTGCCTCCCATTTACCATCGTGATGTGAAGTCCAGCAACATTTTACTTGATGAAAGACTCAATGCCAAAGTTTCTGACTTCGGGCTTTCTAGGCTGGTG GAGGCAAGTGAAAACAATGATAGCCATATCTTCACTTGTGCTCAGGGGACCCTTGGTTATCTTGACCCAGAATATTACCGTAACTTTCAGCTTACTGATA AAAGTGATGTTTATAGCTTTGGAGTTGTTCTACTGGAGGTATTGACATCAAAGAAGGCTATTGATTTTAACCGAGAAGAAGAAAATGTGAATTTGGTGGT GTATATAAAGAACGTGATTGAGGAAGATAGACTGATGGAAGTCATTGATCCAGTGCTTAAGGAAGGTGCTAGCAAGCTGGAACTGGAAACAATGAAAGCA TTGGGATCCCTGGCAGCAGCTTGTTTGCATGACAAGAGGCAGAATCGACCTTCAATGAAAGAAGTTGCAGATGAGATCGAATACATCATTAGTATTGAAG CAGGAAAGGTTTCTAAAACCTAG
AA sequence Show only first row Show all	>Potri.006G090200.1 pacid=42767956 polypeptide=Potri.006G090200.1.p locus=Potri.006G090200 ID=Potri.006G090200.1.v4.1 annot-version=v4.1 MEKSILSMLILMVTLLLCSWSATALQHCGNCGLTPVPFPLSTGPDCGNQQYKLRCSFGKLWFDALNGSSYLIASINPVLRRIVIRPASLANKICISSDFH SQGIQLNQNLPFSITNSNTILLLNCKNEILHLKPPIDCAPGSICHNYIQGNAAACASAPLCCTFKSSTGLQSAYMIKVYDGGCAAYQSFVNLDVKKVGMI KKWPEPGVEIEWALPEEPICKIPVDCKDLLYSKCLPDPISLGQKRCFCDAGFKWDPINGLCQNLKCLPGKVCKKRKKKTVVFAGAAVGAVAVLVMVLGGG LFLKKQNRSKRAQKNLIKERKEMLNAKHSGKSARIFTGKEITKATNNFSKDNLIGAGGFGEVFKGILDDGTVTAIKRAKLGNTKGIDQVINEVRILCQVN HRSLVRLLGCCVELEQPIMIYEYIPNGTLFDHLHCHHSGKWTSLSWQLRLRIAYQTAEGLTYLHSAAVPPIYHRDVKSSNILLDERLNAKVSDFGLSRLV EASENNDSHIFTCAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLEVLTSKKAIDFNREEENVNLVVYIKNVIEEDRLMEVIDPVLKEGASKLELETMKA LGSLAAACLHDKRQNRPSMKEVADEIEYIISIEAGKVSKT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02070			Protein kinase family protein ...		Potri.006G090200 [exp]	0	1
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	6.92	0.6087
					Potri.006G070200 [exp]	8.66	0.5893
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	16.73	0.5652
AT3G60650			unknown protein		Potri.002G144400 [exp]	48.16	0.4981
					Potri.006G047250 [exp]	51.99	0.5013
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	58.78	0.4954
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Potri.015G077700 [exp]	61.92	0.4954
AT3G42880			Leucine-rich repeat protein ki...		Potri.001G166300 [exp]	62.52	0.4869
AT1G51600	GATA	GATA28, TIFY2A,...	GATA TRANSCRIPTION FACTOR 28, ...		Potri.017G042300 [exp]	71.83	0.4671
AT2G45380			unknown protein		Potri.002G147150 [exp]	78.01	0.4566

Compare expression of checked genes

Potri.006G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.