Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 669 / 0 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 613 / 0 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 525 / 0 Glucose-1-phosphate adenylyltransferase family protein (.1) AT1G74910 206 / 8e-63 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 203 / 8e-62 ADP-glucose pyrophosphorylase family protein (.1) AT3G02270 52 / 4e-07 Trimeric LpxA-like enzyme (.1) AT2G34970 52 / 4e-07 Trimeric LpxA-like enzyme (.1) AT5G19220 45 / 4e-05 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT5G19485 43 / 0.0003 transferases;nucleotidyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060100 [exp] 683 / 0 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 681 / 0 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 588 / 0 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 205 / 2e-62 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 189 / 2e-56 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.005G045200 [exp] 58 / 7e-09 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.009G066400 [exp] 44 / 0.0001 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1) Potri.001G271800 [exp] 43 / 0.0003 AT5G19485 630 / 0.0 transferases;nucleotidyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004699 [exp] 680 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 680 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 674 / 0 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 508 / 0 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 471 / 1e-167 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 250 / 1e-83 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10042942 [exp] 190 / 1e-56 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10032440 [exp] 189 / 4e-56 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10014608 [exp] 175 / 3e-53 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10028418 [exp] 114 / 7e-32 AT2G39770 113 / 4e-32 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0110 [poplar] [flax] GT-A PF12804 [poplar] [flax] NTP_transf_3 MobA-like NTP transferase domain
Representative CDS sequence Show only first row Show all	>Potri.006G090300.1 pacid=42769426 polypeptide=Potri.006G090300.1.p locus=Potri.006G090300 ID=Potri.006G090300.1.v4.1 annot-version=v4.1 ATGAAGGCACTCATTCTTGTTGGAGGATTTGGGACTCGTTTGAGGCCTTTAACCCTCAGTGTACCGAAGCCGCTGGTTGATTTTGCTAACAAACCCATGA TACTGCATCAGATTGAAGCTCTCAAAGCAATTGGAGTCACTGAAGTGGTCTTGGCAATTAACTACCAGCCAGAGGTTATGCTGAATTTCTTGAAAGAATA CGAGAAAAGGCTTGAAATTAAGATCACCTGCTCACAAGAGACTGAGCCACTTGGCACAGCAGGTCCTTTAGCCCTAGCTAGAGATAAGCTCATTGACGAT TCTGGTGCACCCTTTTTTGTCCTCAACAGTGATGTTATAAGTGAGTATCCGTTAAAACAAATGATTGAATTTCACAAAGGCCATGGAGGGGAGGCTTCCA TTATGGTAACCAAGGTGGATGAACCATCAAAGTATGGTGTGGTGCTGATGGAAGAAACTAGCGGGAAGGTTGAGAAATTTGTTGAGAAACCAAAAATATT TGTAGGTAACAAGATCAATGCTGGAATCTACTTGTTGAATCCCTCTGTTCTTGATCGGATTGAACTGAGGCCCACCTCAATAGAGAAAGAAGTCTTCCCA AAGATTGCAGCAGAGAATAAGCTGTTTGCCATGGTCCTACCTGGGTTCTGGATGGACATTGGACAGCCAAAAGACTACGTTACAGGTCTGAGACTATACC TGGATTCTTTGCGGAAAATGTCCTCTCCAAAACTGGCCACTGGACCAAACATTGTTGGAAATGTTCTCGTTGATGAGAGTGCAGTAATTGGAGAAGGATG TCTAATCGGACCAGATGTAGCAATCGGCCCAGGTTGCATAATAGACTCGGGAGTTAGGCTTTCCCGCTGCACTGTAATGCGGGGAGTGCGAATCAAGAAG CATGCATGCATCTCTAGTAGTATCATTGGATGGCATTCTACTGTGGGGAGATGGGCTCGCATAGAGAACATGACAATCTTAGGAGAAGATGTTCATGTTA GCGATGAAGTTTACAGTAATGGGGGTGTTGTCCTGCCTCATAAGGAAATAAAGTCTAGCATTTTGAAGCCAGAAATTGTCATGTGA
AA sequence Show only first row Show all	>Potri.006G090300.1 pacid=42769426 polypeptide=Potri.006G090300.1.p locus=Potri.006G090300 ID=Potri.006G090300.1.v4.1 annot-version=v4.1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKEYEKRLEIKITCSQETEPLGTAGPLALARDKLIDD SGAPFFVLNSDVISEYPLKQMIEFHKGHGGEASIMVTKVDEPSKYGVVLMEETSGKVEKFVEKPKIFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFP KIAAENKLFAMVLPGFWMDIGQPKDYVTGLRLYLDSLRKMSSPKLATGPNIVGNVLVDESAVIGEGCLIGPDVAIGPGCIIDSGVRLSRCTVMRGVRIKK HACISSSIIGWHSTVGRWARIENMTILGEDVHVSDEVYSNGGVVLPHKEIKSSILKPEIVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.006G090300 [exp]	0	1
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.004G228800 [exp]	1.00	0.8331	Pt-ARF1.12
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.002G079200 [exp]	12.88	0.8030
AT3G15940			UDP-Glycosyltransferase superf...		Potri.001G179000 [exp]	17.43	0.7908
AT3G52990			Pyruvate kinase family protein...		Potri.010G233200 [exp]	20.78	0.7109
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Potri.007G128600 [exp]	23.66	0.7176
					Potri.019G129532 [exp]	24.97	0.7094
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.008G097100 [exp]	27.38	0.7725
AT3G15430			Regulator of chromosome conden...		Potri.011G121900 [exp]	34.08	0.7682
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	35.46	0.7261
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	50.47	0.7333

Compare expression of checked genes

Potri.006G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.