Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37770 503 / 0 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37790 493 / 1e-177 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT3G53880 479 / 8e-172 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 416 / 3e-147 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT5G62420 264 / 4e-87 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G01670 248 / 6e-81 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21250 225 / 4e-72 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 222 / 8e-71 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59960 221 / 2e-70 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 210 / 5e-66 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102032 [exp] 468 / 2e-167 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 433 / 8e-154 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 426 / 7e-151 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 402 / 2e-141 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.001G125400 [exp] 276 / 4e-92 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G193100 [exp] 254 / 5e-83 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G097000 [exp] 246 / 6e-80 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G144600 [exp] 236 / 9e-76 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.010G097800 [exp] 235 / 2e-75 AT2G37770 250 / 3e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010885 [exp] 484 / 5e-174 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 471 / 1e-168 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010884 [exp] 456 / 9e-163 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10021491 [exp] 433 / 5e-154 AT2G37770 464 / 2e-166 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024354 [exp] 436 / 2e-151 AT2G37770 467 / 2e-163 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10012652 [exp] 425 / 6e-149 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024350 [exp] 333 / 2e-111 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10027216 [exp] 281 / 6e-94 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031162 [exp] 273 / 1e-90 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031739 [exp] 268 / 1e-88 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.006G090600.3 pacid=42767319 polypeptide=Potri.006G090600.3.p locus=Potri.006G090600 ID=Potri.006G090600.3.v4.1 annot-version=v4.1 ATGGCAAATGAGATACGATTCTTCGAATTAAACACAGGAGCTAAGATGCCGTCAGTGGGGCTCGGCACCTGGCAGTCTGATCCAGGTGTCGTCGGTGCTG CCGTGACTGCCGCCGTCAAGATCGGATACCGCCATATTGATTGTGCTCAAGCTTATAAAAATGAGGAGGAGGTTGGTTTGGCTCTGAAGAAACTCTTCCA AGACGGCGTGGTGAAGCGCGAGGATTTATTTATTACCTCAAAACTCTGGTGCTCTAATCATGCTCCAGAAGATGTGTCAGAGGCATTCGCAGGAACTTTG AAGGATCTACAACTTGATTACGTTGATTTGTATCTTATACACTGGCCTGTTCGGATGAAGAAGGGATCAATTGGCATCAAGCCTGAGAACTTTGCCCAAC CAGATTTACCTCTGACATGGCAAGCGATGGAAGCAGTCTATGATTCTGGCAAGGCTCGTGCTATTGGTGTGAGTAACTTCTCTACAAAGAAACTGGCGGA TTTGCTGGAGGTTGCACGTGTTCCTCCTGTTGTGAATCAGGTGGAATGCCATCCTGCATGGAACCAGGCAAAGCTTCATTCATTTTGTCAATCCAAGGGA GTTCACCTTTCTGGATATTCACCTCTAGGATCTCCTGGCACCACATGGCTCAAGAGTGATGTACTCAAGAACCCATATCTAAATATGGTTGCAGAGAAAT TGGGCAAAACTCCTGCTCAAGTTGCCCTACGCTGGGGCCTTCAAAAGGGTCATAGCGTGCTTCCTAAGAGTACACATGAAGCATGGATCAAGGAGAACTT TGATGTCTTTACATGGTCTATTCCAGAGGACCTGATTGACCAGTTTTCGAAAATTGAGCAGGCAAGACTGCTCAGAGGTACTTCATTTGTCCACGAGACC CTCAGCCCATATAAGACCCTCGAGGAGCTCTGGGATGGTGAGATCTGA
AA sequence Show only first row Show all	>Potri.006G090600.3 pacid=42767319 polypeptide=Potri.006G090600.3.p locus=Potri.006G090600 ID=Potri.006G090600.3.v4.1 annot-version=v4.1 MANEIRFFELNTGAKMPSVGLGTWQSDPGVVGAAVTAAVKIGYRHIDCAQAYKNEEEVGLALKKLFQDGVVKREDLFITSKLWCSNHAPEDVSEAFAGTL KDLQLDYVDLYLIHWPVRMKKGSIGIKPENFAQPDLPLTWQAMEAVYDSGKARAIGVSNFSTKKLADLLEVARVPPVVNQVECHPAWNQAKLHSFCQSKG VHLSGYSPLGSPGTTWLKSDVLKNPYLNMVAEKLGKTPAQVALRWGLQKGHSVLPKSTHEAWIKENFDVFTWSIPEDLIDQFSKIEQARLLRGTSFVHET LSPYKTLEELWDGEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090600 [exp]	0	1
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Potri.019G052200 [exp]	3.16	0.8667
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	6.78	0.8896
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	8.77	0.8899
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.015G134600 [exp]	9.48	0.8633	Pt-GA20.2,GA20ox8
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	17.60	0.7936	RAB11.4
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	18.76	0.8773
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.008G095300 [exp]	22.80	0.7679
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.016G066100 [exp]	23.06	0.8597	Pt-SPP1.2
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Potri.008G057300 [exp]	30.24	0.8364
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	30.57	0.8416	Pt-BMY.1

Compare expression of checked genes

Potri.006G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.