Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14730 649 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 377 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 364 / 7e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 362 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 362 / 1e-113 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 359 / 3e-113 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 350 / 2e-110 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 348 / 2e-110 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 353 / 3e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 349 / 3e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128900 [exp] 374 / 4e-120 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 370 / 7e-119 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 374 / 4e-118 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 369 / 5e-116 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 363 / 5e-116 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 362 / 5e-114 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 353 / 4e-112 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 356 / 5e-112 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 356 / 2e-111 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 373 / 4e-118 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031028 [exp] 356 / 1e-113 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 355 / 8e-113 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 361 / 2e-112 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024381 [exp] 357 / 2e-112 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 351 / 3e-112 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 357 / 1e-110 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 350 / 2e-110 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 350 / 1e-109 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 352 / 2e-109 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.006G090900.1 pacid=42769099 polypeptide=Potri.006G090900.1.p locus=Potri.006G090900 ID=Potri.006G090900.1.v4.1 annot-version=v4.1 ATGAGAAAAACCTCTTCCTTGTGTTTCTTGGCTTGTGGCACCGGGGCTACAAGCTGTTACTGGTCCACAAATCTGACGGCACAGTTCGTGGAAGCATTTG TAAAGAATTTCAAGCGTCTCGTCTCGCAAGGTGGACTGGTTCTTGCTTTGGCTTCTGGGTTCGGAATTAATGGTCATATGCTGAAAAGAACCATCTTCTC CAAAACCCGTACTTCCACCCTCCTCAACTTCTCTACCTCATCATCATCTGCGAACCCACCCTATAATATCACTACCTGCATTATTGCTTCTCTTCAACAA TGTGCTATTAACAAGAACCTCAAAAAGGGTCAACAACTTCATGCCCAATTGCTCATCACCGGCCTTTCCTCCTCCTCACCCTCATCCACCACGAGTCTCA TCAACATGTATGCTAAATGCAACCAAATGAACCAGGCCCTTTTAGTTCTTAACCGCACCGCTGATTATGCCCGTAATGTTTTTGCATATAATGCATTGAT TTCCGGGTTTGTTTTAAATGGGTTGCCACAAGATGGATTGGGAGCTTATGAGGAAATGAGACAGGCGGGGGTTTTGCCGGATAAGTATACGTTTCCGTGT CTAATTAAAGGGTTATGTGAGGTTATGGAGGTTTTCCAAGTGAAAAAGATTCATGGGTTGGTGCGTAAACTTGGTTTGGACTTGGACATGTATGTGGGTA GTTCTTTGGTTAGTAGTTACTTGAAGTCCGAGTTAATGAAAGAGGCACGTGAGTTGTTCGATGAAATTCCTGACAGGGATGTTGTATTGTGGAATTCGAT GGTTAATGGGTATGCACAGATTGGTCGGTTCGATGAGGCGTTAGGAGTTTGCAGGGAAATGAGTCAAGAAGGGGTTTTGATGAGTAAGTTTACTGTTAGT GGGGTTTTGTCGGTTTTTGCTGGAAGGGGGGATTTCGATAATGGAAGACTGGTTCATGGGTTCATGATAAAAATGGGGTTTGATTCTTGCGTTTCAGTTT GCAATGCATTGATTGATATGTATGGGAAGTGTAGGTGTGTTGTTGATGCATTAGAAATTTTTGAGACAATGAACGAGAAGGATATATTTTCGTGGAATTC AATTTTATCTGCTAACGAGCTTTGCAGTGATCATGATAGAACGTTGAGGTTGTTTGATAGAATGTTAGGTGATGGGGTTCAGCTTGATTTAGTTACAATT ACTACCATTCTTCCTGCGTGCTCTCATCTTGCTGCCCTGGTTCATGGTAGAGAGATTCATGGCTACATGATTGTTAATGGGTTTGTCAAGGATGGTGAGA GTGAAAATATGTATAATTTGCAAACTATTAATGCTCTTATGGACATGTATGCTAAATGCGGTAGTATGAGAGATGCTGGAATGGTTTTTTATAACATGAG CAATAGGGACACAGCATCATGGAATATAATGATCATGGGATATGGTATGCATGGTTATGGAAATGAGGCATTATATATGTTTTCAGACATGTGCAAGTCC GGGCTTAAACCCAATGAGATCACATTTGTGGGAGTTTTGTTAGCTTGCAGTCATGCAGGTTTTATAAGCCAAGGGATTAAATTCCTTGGGGAAATGGAGC TGAAACATGGTGTGGTTCCAACCATTCAGCATTATACTTGCGTTATTGACATGCTTGGGCGAGCTGGGCAGCTTGAGGAAGCGTATAAGTTGGCTGTAAC AATGCCTATTCAGACCAATCCAGTTGTATGGAGGGCTTTGTTGGCAGCATGTCAGCTCTATGGTAACGTAGATCTAGCTGAGGTTGCTGCACAAAAAGTA TTTGAGCTCAATCCTGCACACTGCGGCAATTATGTATTGATGTCAAATGCTTATGTGGCAGCTGGTCGATATCAGGAAGTGTTAGACATTAGACATACAA TGAGGCAACAAGATGTGAAGAAGACACCAGGATGTAGCTGGATTGAACTCAAGAATGGCATGAATACTTTTATTAATGGTGACCGGAACCATCCTGAAGC CAGGTTGATTTATCCAGAATTGCACTTATTGGCTGCCCACATTCGTGAGCATGGATATGTTCCACTTCTCTAG
AA sequence Show only first row Show all	>Potri.006G090900.1 pacid=42769099 polypeptide=Potri.006G090900.1.p locus=Potri.006G090900 ID=Potri.006G090900.1.v4.1 annot-version=v4.1 MRKTSSLCFLACGTGATSCYWSTNLTAQFVEAFVKNFKRLVSQGGLVLALASGFGINGHMLKRTIFSKTRTSTLLNFSTSSSSANPPYNITTCIIASLQQ CAINKNLKKGQQLHAQLLITGLSSSSPSSTTSLINMYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPC LIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVS GVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDRTLRLFDRMLGDGVQLDLVTI TTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKS GLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKV FELNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMRQQDVKKTPGCSWIELKNGMNTFINGDRNHPEARLIYPELHLLAAHIREHGYVPLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	0	1
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	1.41	0.9364
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	4.47	0.9279
AT1G33350			Pentatricopeptide repeat (PPR)...		Potri.013G089400 [exp]	4.89	0.9253
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	5.47	0.9296
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	6.48	0.9327
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.006G223300 [exp]	6.63	0.9231
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	6.78	0.9099
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	8.94	0.9252
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	9.48	0.9265
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	9.79	0.9293

Compare expression of checked genes

Potri.006G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.