Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53900 378 / 9e-133 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT5G40870 88 / 3e-19 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT4G26510 86 / 1e-18 UKL4 uridine kinase-like 4 (.1.2) AT3G27190 84 / 5e-18 UKL2 uridine kinase-like 2 (.1) AT1G55810 84 / 7e-18 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27440 82 / 2e-17 UKL5 uridine kinase-like 5 (.1) AT3G53920 49 / 3e-06 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069600 [exp] 88 / 3e-19 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 87 / 8e-19 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 83 / 2e-17 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 82 / 2e-17 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G071200 [exp] 76 / 3e-15 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024350 [exp] 434 / 2e-151 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10012654 [exp] 421 / 7e-147 AT3G53900 367 / 1e-125 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10035216 [exp] 89 / 2e-19 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 87 / 7e-19 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10041569 [exp] 85 / 4e-18 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 74 / 2e-14 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 74 / 2e-14 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10022289 [exp] 71 / 1e-13 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Potri.006G091000.8 pacid=42767770 polypeptide=Potri.006G091000.8.p locus=Potri.006G091000 ID=Potri.006G091000.8.v4.1 annot-version=v4.1 ATGGCGTGCCGCGTTAGTAATATCAACTGTCTCCGGGCATACCCTCCTTCCACGCCGCGTTTCTCGCCCAAATGTCATCACCAAAACCCTAACTCTCCTC CTCTCCTACTTAATAATCATTCCTTTCCCCCTCCTCCTACCCTCAAACCCCGTCTTCCAAAACAGATGATGTCGTGCTCCGTTACTCTTCGGCGCAGCTT TGTTACTGTGAAGTCTCACATGGCCACTGCCGAGGAGATGTCCATTTCAGAGGACCGCATGCTTGTATTTGTGCCTCCACATCCATTGATAAAGCACTGG GTTTCCGTTTTGAGAAATGAACAAACTCCTTCCCCGATTTTCAGGAATGCTATGGCTGAGTTAGGCAGGCTACTTATATATGAAGCTTCAAGGGACTGGT TGCCTATGGTCACTGGAGAGATTCAGTCACCGATGGGAGTTGCATCTGTTGAATTTATTGATCCAAGAGAGCCTGTGGCAATTATTCCAATCTTGCGAGC TGGTCTTGCTCTTGCAGAACATGCATCATCAATTCTGCCAGCAACCAAAACATACCATCTAGGGATAAGTAGAGATGAAGAGACACTTCAACCAACAATA TATCTGAATAAGTTGCCTGACACATTCCCTGAAGGGTCTCGAGTTCTTGTGGTCGATCCTATGCTGGCAACAGGGGGGACGATAGTGGCGTCGCTTGAAC TTATTAAGGAGCGTGGGGTTGAAAACCAGCAGATCAAAGTGATATCTGCTGTAGCTGCTCCTCCAGCCCTTCAAAAGCTCAGTGAGAAATTCCCGGGGCT TCATGTTTACACTGGAATCATAGACCCCACTGTTAACGACAAAGGGTTCATAGTTCCTGGACTTGGAGATGCAGGAGATCGCAGCTTCGGAACATGA
AA sequence Show only first row Show all	>Potri.006G091000.8 pacid=42767770 polypeptide=Potri.006G091000.8.p locus=Potri.006G091000 ID=Potri.006G091000.8.v4.1 annot-version=v4.1 MACRVSNINCLRAYPPSTPRFSPKCHHQNPNSPPLLLNNHSFPPPPTLKPRLPKQMMSCSVTLRRSFVTVKSHMATAEEMSISEDRMLVFVPPHPLIKHW VSVLRNEQTPSPIFRNAMAELGRLLIYEASRDWLPMVTGEIQSPMGVASVEFIDPREPVAIIPILRAGLALAEHASSILPATKTYHLGISRDEETLQPTI YLNKLPDTFPEGSRVLVVDPMLATGGTIVASLELIKERGVENQQIKVISAVAAPPALQKLSEKFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Potri.006G091000 [exp]	0	1
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Potri.004G087100 [exp]	3.87	0.9610
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.003G033200 [exp]	7.74	0.9335
AT4G27390			unknown protein		Potri.001G405800 [exp]	9.53	0.9400
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	10.39	0.9534
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	10.48	0.9586
AT1G32580			plastid developmental protein ...		Potri.008G169900 [exp]	13.85	0.9406
AT1G65030			Transducin/WD40 repeat-like su...		Potri.012G107400 [exp]	15.16	0.9196
AT5G15300			Pentatricopeptide repeat (PPR)...		Potri.017G086100 [exp]	18.33	0.9239
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	18.33	0.9515
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	20.71	0.9340

Compare expression of checked genes

Potri.006G091000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.