Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02040 320 / 1e-112 PRA1.A1 prenylated RAB acceptor 1.A1 (.1.2) AT5G05987 309 / 4e-108 PRA1.A2 prenylated RAB acceptor 1.A2 (.1) AT3G11397 304 / 3e-106 PRA1.A3 prenylated RAB acceptor 1.A3 (.1) AT3G11402 306 / 8e-99 Cysteine/Histidine-rich C1 domain family protein (.1.2) AT5G01640 44 / 3e-05 PRA1.B5 prenylated RAB acceptor 1.B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198000 [exp] 328 / 7e-116 AT5G05987 253 / 3e-86 prenylated RAB acceptor 1.A2 (.1) Potri.008G060400 [exp] 324 / 5e-114 AT3G11397 266 / 4e-91 prenylated RAB acceptor 1.A3 (.1) Potri.005G219100 [exp] 45 / 6e-06 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022592 [exp] 340 / 2e-120 AT5G02040 298 / 9e-104 prenylated RAB acceptor 1.A1 (.1.2) Lus10021492 [exp] 338 / 7e-120 AT5G02040 297 / 1e-103 prenylated RAB acceptor 1.A1 (.1.2) Lus10030160 [exp] 316 / 9e-111 AT5G05987 308 / 1e-107 prenylated RAB acceptor 1.A2 (.1) Lus10001021 [exp] 309 / 8e-108 AT5G05987 301 / 1e-104 prenylated RAB acceptor 1.A2 (.1) Lus10021886 [exp] 40 / 0.0006 AT5G09500 244 / 1e-81 Ribosomal protein S19 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [poplar] [flax] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Potri.006G091300.7 pacid=42768655 polypeptide=Potri.006G091300.7.p locus=Potri.006G091300 ID=Potri.006G091300.7.v4.1 annot-version=v4.1 ATGGATTGGGGAAATGTAACGGCAGAAGATCTGATCGATGCGCTTCGAGAAGTTGACTGGTCATCTCCACCTCGACCTCTCTCTGAGTTCTTCTCTAGAT TTACTCTCCCTAAATCCTCCTCCAAATGGAACAGCCGCCTCAAATGTAATCTCTACTATTACAGGACGAATTACTTCATTATGATGATTCTCATTATGGG ACTGGGATTCCTTAGGAGGCCACTTGCTATTGTCGCTGCTCTTTTAACAGCACTTTCCATTGCATTTATGAATGATAGCTTTGCAGGTACTTTTAGCGAG AAGGTAATGAGAACTGTGAGGCAATTCTCTCCACATTTAGCGGCAAAAATGAGACCTCCTCTGACACCTGGTATTCGTGGACGACCATCAGCGAAAAGAG CAATTTACATATGTGGTCGGCCTCGCTGGTTCTTTGTCATGATATTTTCTTTTGTGAGTTTCACCCTTTGGTATGTCTCCTGTGGTCTCTTGACTGTTCT ATGGGCACTTGCCATTGGACTTCTCGCCACCATCCTACATGCAAGTTTCCGAACACCTAACCTGAAAGCTCGTCTGAACACATTTCGTGAGGAGTTTCGT GCAGTTTGGCGCAATTACAGTGAGCTGTAG
AA sequence Show only first row Show all	>Potri.006G091300.7 pacid=42768655 polypeptide=Potri.006G091300.7.p locus=Potri.006G091300 ID=Potri.006G091300.7.v4.1 annot-version=v4.1 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTLPKSSSKWNSRLKCNLYYYRTNYFIMMILIMGLGFLRRPLAIVAALLTALSIAFMNDSFAGTFSE KVMRTVRQFSPHLAAKMRPPLTPGIRGRPSAKRAIYICGRPRWFFVMIFSFVSFTLWYVSCGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFR AVWRNYSEL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Potri.006G091300 [exp]	0	1
AT1G59740			Major facilitator superfamily ...		Potri.001G272900 [exp]	3.46	0.9231
AT5G01350			unknown protein		Potri.006G101901 [exp]	6.70	0.8929
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.013G021900 [exp]	11.18	0.9077
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.001G220700 [exp]	13.85	0.8603
AT3G22750			Protein kinase superfamily pro...		Potri.010G083500 [exp]	16.06	0.7886
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.001G280100 [exp]	17.60	0.8619
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Potri.010G154100 [exp]	21.16	0.8958	Pt-AGL8.2
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119650 [exp]	23.32	0.8796
					Potri.019G059000 [exp]	23.62	0.8094
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191000 [exp]	24.08	0.8927

Compare expression of checked genes

Potri.006G091300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.