Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 371 / 4e-116 lectin protein kinase family protein (.1) AT4G00340 328 / 4e-100 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 306 / 6e-92 SD2-5 S-domain-2 5 (.1) AT5G35370 301 / 2e-89 S-locus lectin protein kinase family protein (.1) AT4G21390 293 / 7e-87 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 280 / 4e-82 ARK3 receptor kinase 3 (.1) AT1G61370 278 / 1e-81 S-locus lectin protein kinase family protein (.1) AT1G61390 276 / 9e-81 S-locus lectin protein kinase family protein (.1.2) AT5G60900 269 / 8e-79 RLK1 receptor-like protein kinase 1 (.1) AT2G19130 271 / 1e-78 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102600 [exp] 1370 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 1363 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.016G102500 [exp] 1363 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 1357 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 695 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G096400 [exp] 686 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 676 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096000 [exp] 609 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.T085100 [exp] 390 / 1e-123 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 1050 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 1031 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 1030 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 623 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 383 / 2e-120 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10013252 [exp] 374 / 2e-117 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10024195 [exp] 365 / 6e-114 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 357 / 3e-111 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 357 / 5e-111 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 352 / 6e-109 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0168 [poplar] [flax] PAN PF00024 [poplar] [flax] PAN_1 PAN domain CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.006G091400.1 pacid=42767040 polypeptide=Potri.006G091400.1.p locus=Potri.006G091400 ID=Potri.006G091400.1.v4.1 annot-version=v4.1 ATGAGGAGTTTCCAAACTTCAACATCTCCAAAATTCCCTTCTTTCCTCACTGTTTTCTTCTTGTTTCTGTCAACTTCATATGCACACAACTTTTTGCTAA GAGGTTCATCTCTATCAGTAGAAGATGATTCAGACATCCTTGTCTCACCGGATAAAACATTCTCCTGTGGGTTCTATGGGATGGGACAAAATGCTTATTG GTTCTCTATTTGGTTCACCAATTCCAAGGACAGGACTGTGGTTTGGATGGCCAACAGAGACAGACCTGCCAATGGCCGGGGCTCAAGAGTTTCTCTACGA GGAGATGGTGCCATGGTCTTGTACGATGTTGATGGCTCCATCATATGGGAGACTAACACCACCTCCACTGATGCTAGAATGGCAGAGCTTCTGGATACTG GTAACCTTGTTATTAAAGGCCCTGGTGGTGAAATTCTATGGCAAAGCTTTGATTCTCCAACTGATACACTTCTTCCAAACCAATTATTTACAAAGAGTAC AAAGCTGATTGCTAGATTACATGGAGGGTCTTATGCTTCTGGATATTTTAATTTCTTTTTTGATAATGATAATGTGCTGAGGTTGAAATATGATGGTCCT GATATTTCAAGCATATACTGGCCTATACCTTATTTGAAAATGTTCGAAAATGGTAGAACAAACTATAATGGTAGCAGAATTGCTGTTTATGATGAAATGG GCCATTTTGTATCTAGTGATTGGTTCCAGTTCATTGCTTCTGACATGGGTTTGTTAAGGATCAGAAGGAGGCTAACAATGGACCATGATGGGAATCTCAG GCTTTATAGCCTGAACAATGACACTGGGTTGTGGGTGATATCATGGGAAGCTCTTACTCAGCTTTGTACTGTTCATGGAGTTTGTGGGAGAAATGCGATT TGTGTAAATACACCAGAGCCCAAGTGTTCATGCCCTCCTGGCTATGAGATCACTGAGCCTGGGAATTGGAATAAAGGCTGCAAGCCTTTGTTTAACGAAA CTCTTTTCCAGTCACAGCAAGTGAAATTTGTGGAGTTGCCGCATGTAGATTACTTTGGATTTGATCTTAATTTCATCGAATCCATTTCGTTAGACTCCTG CATGAAGCTCTGCGTGGGGGATTATCGGTGTAAAGCTTTTAACTATAAGCTAACTGGGGAGCGACGTTGTTACACGAAAAGTGAGCTTTTCAACGGTTAC CAGTCTCCAAGTTTTGAAGGCAAAATATATCTCAAACTGCCAGTGACTGTTGAGACATCTCAACTCGCTATTCTTAATGGCACTGACCCCATTTGCCAGT CTGATGAATTGGAAACAATGATCGGTTCTCCTTCTATGTATAACATCAACACTAAGAGAATGAGATGGGTTTATCTCTATTCATTTGCTTCTGCCATTGG TTTTATTGAACTTCTCTTTGTAGTCTCAGGTTGGTGGTTTCTTTTCAGAAAGCATGGTGTGCCAGCTTTGGTGGAAGATGGATATCAAGTGTTATCAAAT CGATTTAGGAGGTTTACTTATGCTGAGCTCAAGAAGGCGACGAATAATTTCAAGGAAGAGCTGGGAAGGGGAGGCTCTGGAACTGTATACAAGGGCATTT TGACAGATGAAAGGGTTGTAGCTGTGAAGAGACTGGAAAACATGTACCAAGGGGAGGATGTATTTTGGGCAGAAGTTAGCACAATTGGAAAAATCAATCA CATGAACCTTGTGAGAATGTGGGGATTCTGTTCAGAGGGCAAACACAGACTCCTAGTCTATGAGCTCATGGAAAATCAGTCACTGGACAAGCATCTATTC TCCCCAAAGTTTCTTGAATGGAAAGACAGGTTTGAAGTTGCCTTGGGGACAGCTAAGGGTTTGGCTTATCTTCACCAAGAGTGTCTAGAATGGATTATAC ATTGTGATGTGAAGCCAGGAAATATACTTCTGGACAGTGAATTTGAACCTAAGATTGCAGATTTCGGGTTAGCCAAGCTGTCTCAGAGGGGTAGCGATAG CTCTGTCTTCTCACGAATTCGAGGAACAAAGGGTTACATGGCTCCAGAGTGGGCTACAAATCTTCCCATCACTGCAAAAGTTGATGTTTATAGTTACGGA GTGGTAATTCTAGAGTTAGTGAAAGGAATCCCTCTCTCAAATTGGGGTATAGAAGGCGGCGAAGAGCATGAATCAGATCTAACAAGGTTTGTCAGAATGG TGAAAAGCAAAATTCAGTGCGGAGAGGACTCCTGGATAGAGGAAATAGTGGATCCAAGATTGAATGGCCAGTTTAGCAGGAACCAAGCAACAACTATCGT TCAACTTGGTATATCTTGTGTGGAGGAAGATAGGAACAAGCGACCAACAATGGATTTAGCAATCCAAGCTCTATTAGAATGTCAAGATTAA
AA sequence Show only first row Show all	>Potri.006G091400.1 pacid=42767040 polypeptide=Potri.006G091400.1.p locus=Potri.006G091400 ID=Potri.006G091400.1.v4.1 annot-version=v4.1 MRSFQTSTSPKFPSFLTVFFLFLSTSYAHNFLLRGSSLSVEDDSDILVSPDKTFSCGFYGMGQNAYWFSIWFTNSKDRTVVWMANRDRPANGRGSRVSLR GDGAMVLYDVDGSIIWETNTTSTDARMAELLDTGNLVIKGPGGEILWQSFDSPTDTLLPNQLFTKSTKLIARLHGGSYASGYFNFFFDNDNVLRLKYDGP DISSIYWPIPYLKMFENGRTNYNGSRIAVYDEMGHFVSSDWFQFIASDMGLLRIRRRLTMDHDGNLRLYSLNNDTGLWVISWEALTQLCTVHGVCGRNAI CVNTPEPKCSCPPGYEITEPGNWNKGCKPLFNETLFQSQQVKFVELPHVDYFGFDLNFIESISLDSCMKLCVGDYRCKAFNYKLTGERRCYTKSELFNGY QSPSFEGKIYLKLPVTVETSQLAILNGTDPICQSDELETMIGSPSMYNINTKRMRWVYLYSFASAIGFIELLFVVSGWWFLFRKHGVPALVEDGYQVLSN RFRRFTYAELKKATNNFKEELGRGGSGTVYKGILTDERVVAVKRLENMYQGEDVFWAEVSTIGKINHMNLVRMWGFCSEGKHRLLVYELMENQSLDKHLF SPKFLEWKDRFEVALGTAKGLAYLHQECLEWIIHCDVKPGNILLDSEFEPKIADFGLAKLSQRGSDSSVFSRIRGTKGYMAPEWATNLPITAKVDVYSYG VVILELVKGIPLSNWGIEGGEEHESDLTRFVRMVKSKIQCGEDSWIEEIVDPRLNGQFSRNQATTIVQLGISCVEEDRNKRPTMDLAIQALLECQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.006G091400 [exp]	0	1
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Potri.015G117700 [exp]	6.55	0.9320
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	11.66	0.9286
AT5G04950		ATNAS1	ARABIDOPSIS THALIANA NICOTIANA...		Potri.004G193400 [exp]	14.38	0.9272
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177601 [exp]	16.00	0.9256
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	18.70	0.9254
					Potri.008G144650 [exp]	19.36	0.8282
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	19.59	0.9248
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	24.55	0.9233	Pt-NRAMP1.4
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G009100 [exp]	25.69	0.9214
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	26.73	0.9224	Pt-ZIP6.4

Compare expression of checked genes

Potri.006G091400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.