Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04590 272 / 3e-90 EMB2748 unknown protein AT4G21190 134 / 2e-37 EMB1417 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18975 129 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103000 [exp] 423 / 5e-151 AT1G04590 300 / 9e-101 unknown protein Potri.016G102800 [exp] 186 / 3e-60 AT1G04590 158 / 2e-48 unknown protein Potri.017G148700 [exp] 132 / 3e-36 AT4G21190 339 / 3e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G076800 [exp] 124 / 8e-34 AT4G18975 320 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019008 [exp] 272 / 5e-91 AT1G04590 281 / 5e-93 unknown protein Lus10015943 [exp] 266 / 1e-89 AT1G04590 284 / 3e-95 unknown protein Lus10028526 [exp] 120 / 2e-32 AT4G18975 327 / 7e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10027535 [exp] 112 / 1e-29 AT4G21190 302 / 5e-103 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039292 [exp] 107 / 9e-27 AT4G21190 339 / 7e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009120 [exp] 69 / 3e-13 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G091500.2 pacid=42767213 polypeptide=Potri.006G091500.2.p locus=Potri.006G091500 ID=Potri.006G091500.2.v4.1 annot-version=v4.1 ATGATTGGGCATTTAAGGAGAATAGGAGTGGGCAGGGTGCAAACCTTGCTAAATTCTAGCTACAAAACGACAATGGAAGTTCAAATACTAACATCTAAGA CACACTCTGCTGCTAATGCTGCTTTGCCTTTGTCACAGGCAGTTTACCATGATGGAAAATCAGAGCAGAATCTGAGGCGAAACCAAATTGGTGACAATGT CTCCAAGAAGGACAAGATCAAATTTCTCATTACCACACTTTTAGATCTAAATGACAGCAAGGATGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGG GAGCAAAAGTTTCCTATTGCGTCAATTAAGCAAGTATTGATTGCTCTTGAGAAGGAACAACAGTGGCATAGAATTGTTCAGGTTATTAAATGGATGCTAA GCAAGGGGCAGGGAACCACAATGGCAACTTATGCACAGTTAATACGAGCATTAGATATGGACCACAGAGCAAAAGAAGCACATGAGTTTTGGTTGAAGAA AATTGGTAGAGATCTTCATTCCGTGCCATGGAAGCTATGTAATAGCATGATATCTATATACTACAGAAACAACATGCTAGAGAATCTTATAAAGCTTTTC AAGGGGTTGGAAGCTTTTGATCGTAAACCTCCAGAAAAATCAATTGTGCAAAAAGTAGCAGATGCATATGAGATGCTAGGCTTACTTGAAGAAAAGGGAA GGTTACTAGAGAAGTACAATCATCTCTTCATTGAGACAGGGAAAGGATGGAACAAGAATTTTAGGGTTGTCTCTTCCAAAAAAAATAACAAATCAGGGAA GGCAAAAAATTGA
AA sequence Show only first row Show all	>Potri.006G091500.2 pacid=42767213 polypeptide=Potri.006G091500.2.p locus=Potri.006G091500 ID=Potri.006G091500.2.v4.1 annot-version=v4.1 MIGHLRRIGVGRVQTLLNSSYKTTMEVQILTSKTHSAANAALPLSQAVYHDGKSEQNLRRNQIGDNVSKKDKIKFLITTLLDLNDSKDAVYGALDAWVAW EQKFPIASIKQVLIALEKEQQWHRIVQVIKWMLSKGQGTTMATYAQLIRALDMDHRAKEAHEFWLKKIGRDLHSVPWKLCNSMISIYYRNNMLENLIKLF KGLEAFDRKPPEKSIVQKVADAYEMLGLLEEKGRLLEKYNHLFIETGKGWNKNFRVVSSKKNNKSGKAKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04590		EMB2748	unknown protein		Potri.006G091500 [exp]	0	1
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	7.61	0.8959
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.010G129101 [exp]	24.57	0.9152
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G138201 [exp]	29.94	0.9192
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.010G199700 [exp]	47.13	0.8682
AT1G78940			Protein kinase protein with ad...		Potri.014G001700 [exp]	70.99	0.9036
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G024900 [exp]	76.86	0.8672
AT1G49180			protein kinase family protein ...		Potri.019G011600 [exp]	79.39	0.8687
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.010G101900 [exp]	96.75	0.8991
AT5G36930			Disease resistance protein (TI...		Potri.007G142600 [exp]	104.49	0.8987
AT3G60300			RWD domain-containing protein ...		Potri.014G048000 [exp]	121.54	0.8902

Compare expression of checked genes

Potri.006G091500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.