Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28470 540 / 0 Major facilitator superfamily protein (.1) AT1G69870 385 / 3e-126 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 359 / 5e-117 NRT1.6 nitrate transporter 1.6 (.1) AT5G62680 352 / 1e-113 Major facilitator superfamily protein (.1) AT1G18880 347 / 3e-112 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 343 / 5e-110 Major facilitator superfamily protein (.1) AT1G52190 310 / 2e-97 Major facilitator superfamily protein (.1) AT1G69860 302 / 3e-95 Major facilitator superfamily protein (.1) AT3G54140 291 / 6e-91 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G68570 290 / 3e-90 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103200 [exp] 875 / 0 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 387 / 2e-127 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.001G351200 [exp] 387 / 2e-127 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 387 / 2e-127 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 369 / 3e-120 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 359 / 6e-117 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 317 / 2e-100 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 296 / 3e-92 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 293 / 2e-91 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024345 [exp] 696 / 0 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 534 / 0 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 378 / 6e-124 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10037221 [exp] 373 / 1e-121 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 367 / 3e-119 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 344 / 2e-110 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 330 / 3e-105 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 297 / 2e-92 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 295 / 8e-92 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 293 / 2e-91 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.006G091600.1 pacid=42768568 polypeptide=Potri.006G091600.1.p locus=Potri.006G091600 ID=Potri.006G091600.1.v4.1 annot-version=v4.1 ATGGAGAATGTTGTCGTTACTGCTAAGACTTCATCTCCTTCAGATGATGATATCTCTCCACCTCCTCCTATCTCTTTTCTTCCTCCGCCTCCGCCTAAAA AGGCACCTGGAGGATGGAGATCTGTAAAATACATTCTTGGGAACGAGTCATTCGAGAAATTGGCTTCCATGGGTCTTATAGCCAATTTAACAGTGTATCT ACAAACAAGATACAACATGGATGGTATTCAATTAGTTAATGTGTACAATATTTGGTCTGGTTCCACCAATGTCACACCCTTGCTTGGTGCTTTCTTATCT GATGCTTATCTGGGAAGGTTCCGCACCCTTCTCTTCGGCTCCATGTCCTCTTTCCTGGGCATGGTGGTCCTGGCCCTAACTGCAGGCATGCCAAAGTTAA GACCCCTCGACTGCCCTGGAGTATCCAATTGCCAAAAACCTCAGGATTGGCAGCTTGGAGTCCTCTATTCGGGCCTTGGGTTGCTTGCCGTTGGAGCGGG AGGTGTTAGGCCCTGCAACATTGCCTTTGGAGCTGATCAGTTCGACACCAGAACTGAAAAAGGACGAGCCCAGCTTGAGAGCTTCTTCAACTGGTGGTAT TTCTCTTTCACAGTGGCTCTCGTGATAGCTCTCACTGCAGTGGTCTACGTTCAGACTAATGTTAGCTGGGTTATAGGTTATGCCATACCAGCTGCCTGCC TCTTCTCGTCTATTATCATTTTCTTGATTGGCAAACACACTTATATAATCACAAAGTCCCAAGGAACCGTTTTTGTCGATATTGCCAAAGTGATTGTAGC TGCCCGTAAGAAGCGTGCAGTGAGTCTTGAATCATCTTCTGGGCATCCCCTCTATGATCCTCCCTTGACTGAGTCAGATCAGCGTGTAGCAAAGCTTGCT CACACTGATATGTTCAAATTCTTTGACAAGGCTGCTCTAATTACTGATCCAAGCGAATTGGATGACAAAGGCTTGCCCAAGAATTCTTGGAGATTATGTA GTGTTCAACAAGTTGAACAGCTGAAACTAATAGTAGGACTTGTGCCAGTTTGGTTTACAGGAATCGGTTGCTTCATTACAATGGACCAAATGAATACTTT TGGCTTGATGCAAGCAATTCAGTCGAACAACGAAGTCCACAATTTTAAAATTCCACCTGGTTGGATGGGCCTTATTTCGATGATTTGCCTTTCAATATGG ATATTCATTTACGAGCAAATTTACCTGCCTCAGGCAAGGAAAAGGTCAAAAAAGAATATTAGATTTACAACGAGACACAGAATCAACACTGGTATTGTAA TGGCAATCCTATGCATGGTGGTGGCTGCAATTGTTGAAAAGAGCCGCCGGGACGCAGCTTTGAAACAGGGAACCTTAGTGTCACCTCAAAGTATTCTGCT GCTGCTGCCACAGTTTGCCTTATCGGGTCTGAACGAAGCATTTGCTGCTGTTGCTATTATGGAATACTACACCAACCATTTGCCAGAAACCATGAGGACT CTTTCTGGGGCAATCTTCTTTCTCAGCTTCTCTGCATCCAGCTACTTGAACACGGCTATTATCAACCTAGTCCACCTCGTGACTTCAAACAATGGGAAAG AATCTCCATGGTTGGGTGGCCGTGACCTCAATAAAGTTAAACTCGACTACTTCTACTACCTTATTGCTAGTTTAGCAGCATTAAATCTCCTGTATTTCAA TCTCTTTTCATGCCGCTATTTGGAAAAGCAAGTTGACAAAAGATCTGAATCAAGGCATGAAGAGATGAATGAAGCCGCTTAA
AA sequence Show only first row Show all	>Potri.006G091600.1 pacid=42768568 polypeptide=Potri.006G091600.1.p locus=Potri.006G091600 ID=Potri.006G091600.1.v4.1 annot-version=v4.1 MENVVVTAKTSSPSDDDISPPPPISFLPPPPPKKAPGGWRSVKYILGNESFEKLASMGLIANLTVYLQTRYNMDGIQLVNVYNIWSGSTNVTPLLGAFLS DAYLGRFRTLLFGSMSSFLGMVVLALTAGMPKLRPLDCPGVSNCQKPQDWQLGVLYSGLGLLAVGAGGVRPCNIAFGADQFDTRTEKGRAQLESFFNWWY FSFTVALVIALTAVVYVQTNVSWVIGYAIPAACLFSSIIIFLIGKHTYIITKSQGTVFVDIAKVIVAARKKRAVSLESSSGHPLYDPPLTESDQRVAKLA HTDMFKFFDKAALITDPSELDDKGLPKNSWRLCSVQQVEQLKLIVGLVPVWFTGIGCFITMDQMNTFGLMQAIQSNNEVHNFKIPPGWMGLISMICLSIW IFIYEQIYLPQARKRSKKNIRFTTRHRINTGIVMAILCMVVAAIVEKSRRDAALKQGTLVSPQSILLLLPQFALSGLNEAFAAVAIMEYYTNHLPETMRT LSGAIFFLSFSASSYLNTAIINLVHLVTSNNGKESPWLGGRDLNKVKLDYFYYLIASLAALNLLYFNLFSCRYLEKQVDKRSESRHEEMNEAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28470			Major facilitator superfamily ...		Potri.006G091600 [exp]	0	1
AT1G16820			vacuolar ATP synthase catalyti...		Potri.005G106933 [exp]	3.46	0.6419
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G007300 [exp]	11.83	0.6401
					Potri.006G047250 [exp]	12.24	0.6222
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031000 [exp]	14.89	0.5535	NAC131
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	15.87	0.6156
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Potri.017G092700 [exp]	15.90	0.5742	ATEXPA21.1,PtEXPA27
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Potri.008G099900 [exp]	17.00	0.7138
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	19.07	0.5693
					Potri.013G031151 [exp]	24.00	0.6094
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	24.37	0.5743

Compare expression of checked genes

Potri.006G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.