Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) AT3G55640 452 / 3e-160 Mitochondrial substrate carrier family protein (.1) AT2G37890 449 / 5e-159 Mitochondrial substrate carrier family protein (.1) AT4G01100 199 / 8e-61 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 171 / 7e-49 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 167 / 2e-48 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G26180 165 / 4e-48 Mitochondrial substrate carrier family protein (.1) AT5G61810 160 / 4e-46 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G51870 157 / 2e-44 Mitochondrial substrate carrier family protein (.1) AT5G01500 154 / 3e-43 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103300 [exp] 588 / 0 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 491 / 6e-176 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 491 / 1e-175 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 202 / 4e-62 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 200 / 3e-61 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 198 / 2e-60 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 196 / 6e-60 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 168 / 4e-49 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 166 / 4e-47 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021497 [exp] 510 / 0 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 492 / 9e-176 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 478 / 2e-170 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 423 / 2e-149 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 341 / 4e-117 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 330 / 5e-113 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 199 / 7e-61 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 197 / 3e-60 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 196 / 2e-59 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 187 / 1e-56 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.006G091900.1 pacid=42770107 polypeptide=Potri.006G091900.1.p locus=Potri.006G091900 ID=Potri.006G091900.1.v4.1 annot-version=v4.1 ATGAACATGGAAGCTAGAGTTGGTGCGGTTGTTGAGGGAGGGCAGAGAGCACTTAATTCTGCCGCCGCCGCCGCCCATGGAAGCATTTTGGATGCAGGTG CCAGGAGATTCTTGCAGCAACAACATAACAACAGTCACCAACAACATTCACAGCTAGGAACTATCCAACAATTGCTTGCTGGTGGTATTGCTGGTGCTTT TAGTAAGACTTGCACGGCTCCTCTCGCACGACTTACTATCCTCTTTCAGGTTCAAGGTATGCACTCTGATGTTACAGCATTGAGCAAGGCTAGCATATGG CGGGAGGCATCTCGTGTTATGAATGAAGAAGGGTTTAGGGCATTTTGGAAAGGCAATCTAGTGACTATTGCGCACCGCCTTCCTTATTCTTCAGTCAGCT TCTATGCTTATGAACGTTACAAGAGTTTATTGCAATCAGTTCTTGGTGTTGAAAATCACGGGGGGAATGGGACTGCAGACCTTGCTGTGCACTTTATAGG TGGTGGGATGGCAGGAATAACAGCTGCTTCTGCCACGTATCCACTGGATCTTGTGAGGACACGCCTAGCAGCACAGAGAAACACAATATACTACAGAGGT ATTTTGCATGCATTTCACACCATATGCAGAGAAGAAGGTTTCCTGGGCTTGTATAAAGGACTTGGAGCAACATTACTTGGTGTTGGACCTAGTATAGCGA TAAGCTTTTCTGTTTACGAGTCTCTCAGATCGTTTTGGCAGTCTAAAAGGCCCAATGATTCTACTGTCATGGCTAGTCTTGCTTGTGGCAGTCTTTCAGG CATTGCATCCTCAACAGCAACATTTCCTTTGGATCTTGTGAGGAGAAGAATGCAGTTGGAAGGGGCTGGTGGTCGAGCACGTGTCTACACGACTGGCTTG TTTGGAGCATTTGCCCATATAATCCAGACTGAAGGGTTGCGAGGCATGTATAGAGGCATTCTGCCCGAGTACTACAAGGTGGTTCCCGGTGTTGGCATTG TGTTCATGACTTACGAGACATTGAAGATGCTACTATCGTGCACCCCCAGCAATTATTAG
AA sequence Show only first row Show all	>Potri.006G091900.1 pacid=42770107 polypeptide=Potri.006G091900.1.p locus=Potri.006G091900 ID=Potri.006G091900.1.v4.1 annot-version=v4.1 MNMEARVGAVVEGGQRALNSAAAAAHGSILDAGARRFLQQQHNNSHQQHSQLGTIQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDVTALSKASIW REASRVMNEEGFRAFWKGNLVTIAHRLPYSSVSFYAYERYKSLLQSVLGVENHGGNGTADLAVHFIGGGMAGITAASATYPLDLVRTRLAAQRNTIYYRG ILHAFHTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSKRPNDSTVMASLACGSLSGIASSTATFPLDLVRRRMQLEGAGGRARVYTTGL FGAFAHIIQTEGLRGMYRGILPEYYKVVPGVGIVFMTYETLKMLLSCTPSNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53940			Mitochondrial substrate carrie...		Potri.006G091900 [exp]	0	1
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	1.73	0.9021
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	2.82	0.8845
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Potri.001G071700 [exp]	3.87	0.8608
AT1G12830			unknown protein		Potri.001G323000 [exp]	6.00	0.8671
AT3G53940			Mitochondrial substrate carrie...		Potri.016G103300 [exp]	7.14	0.7815
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	7.34	0.8502
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.014G129700 [exp]	8.94	0.8456
AT5G41190			unknown protein		Potri.003G124700 [exp]	10.58	0.8555
AT3G53580			diaminopimelate epimerase fami...		Potri.016G120900 [exp]	11.74	0.8594
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	12.64	0.8534

Compare expression of checked genes

Potri.006G091900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.