Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37900 777 / 0 Major facilitator superfamily protein (.1) AT3G53960 758 / 0 Major facilitator superfamily protein (.1) AT3G54450 462 / 2e-157 Major facilitator superfamily protein (.1) AT2G40460 448 / 2e-151 Major facilitator superfamily protein (.1) AT3G54140 446 / 9e-151 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 437 / 1e-147 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 428 / 1e-143 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G46040 419 / 3e-140 Major facilitator superfamily protein (.1) AT5G46050 418 / 1e-139 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT1G62200 412 / 2e-137 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103500 [exp] 1030 / 0 AT2G37900 776 / 0.0 Major facilitator superfamily protein (.1) Potri.008G061100 [exp] 758 / 0 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1) Potri.001G027100 [exp] 470 / 5e-160 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 461 / 5e-157 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 460 / 2e-156 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 459 / 1e-155 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 448 / 1e-151 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 447 / 9e-151 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 446 / 9e-151 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024340 [exp] 835 / 0 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 780 / 0 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10003614 [exp] 461 / 2e-156 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 457 / 9e-155 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10040099 [exp] 455 / 4e-154 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 454 / 2e-153 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10039521 [exp] 449 / 8e-152 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10000670 [exp] 449 / 9e-152 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 447 / 4e-151 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10008232 [exp] 462 / 2e-150 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.006G092000.4 pacid=42767546 polypeptide=Potri.006G092000.4.p locus=Potri.006G092000 ID=Potri.006G092000.4.v4.1 annot-version=v4.1 ATGGAGCTTAAAAAGGGAGTAGAAACGAGAGGTGTTAATGAAGAGAAATGGGTTCATGATTCCTCGGTGGATCATAAAGGAAGGGTTCCCCTCCGAGCCT CTACTGGTGCATGGAAAGCATCACTCTTCATCATCGCAATTGAATTCAGTGAGAGATTGAGTTACTTCGGAATAGCGACGAGCCTAATCATTTATCTTTC CAAGGTGATGCATCAAGACCTTAAGACAGCTGCTAGGAGTGTAAACTACTGGGGTGGCGTGACTACATTGATGCCATTATTTGGAGGCTTTCTTGCTGAT GCTTACTTGGGCCGATTTACCACTGTTTTTGTTTCATCCATTGTCTATCTTCTGGGCTTGATTCTCTTAACAATGTCCGCGTTTGTACCAAGTCTAAAGG CTTGTGAGGCAGCTGTGTGTCCCAAGCCTCGGAAGGTTCATGAAGTAGTCTTCTTTCTTGCAATTTACTTGATCTCCGTAGGAACTGGAGGGCACAAACC CTCCTTGGAGAGTTTTGGCGCTGACCAATTTGACGAGAATCACGATGACGAAAGAAAGAAAAAGATGTCCTACTTCAACTGGTGGAACTTCGGCCTCTGT TGTGGACTTCTGCTTGGTGTGACTGTGGTTGTTTATGTGCAAGATCATGTTGGTTGGGGTGCTGGAGATATCATTTTTACTGCAGTTATGGCTTTATCAC TAGTTATCTTCATTATAGGACGGCCATTTTACCGCTATCAGGTGCCAACAGGGAGCCCCTTGACCCCAATGTTGCAGGTCCTGGTAGCTGCCATTAGAAA CAGAAACCTGCCATATCCTTCCAATCCTGCAGAATTGTATGAAGTTCCCAAGTCAAGAACGGACAAAGGGAGGCTTCTCTGCCATACCGAAAGTCTCAAG TTTCTTGACAAGGCGACTATTGTGAAGGATAGGGAAATTGGTGCTGAAAACCAAAATCCTTGGAGACTAGCAACCGTGACCAAGGTTGAAGAGATGAAGC TTATTCTCAATTTGATCCCAATATGGCTAGCCATGCTACCATTTGGAATTTCTGTTGCCCAAACCGCCACATTCTTCATCAAGCAAGGCACTACGTTGGA CCGAAATATTGGTAACGGCTTTCAGATCCCTCCAGCCTCAGTTTACGCACTTGCCGCTATTGGAATGATAGTCTCCGTGACGATTTACGAGAAGATTTTA GTCCCAGTATTACGAAGGGCTACAGGAAATGAGCGAGGCATCAAAATCCTCCAGAGAATTGGCTTTGGAATGCTTTTCTCAATCTCAACAATGGTAGTTT CAGCCTTGGTTGAGAGGAAGAGACTAGGTGTTGTAGCGAAGGATCCAGTGAAGGGCTCACTTTCAATGAGTGTCTTCTGGTTGGCTCCACAATTCATCAT CATTGGTGTAGGAGATGCATTTACTCTAGTGGGCTTGCAAGAGTATTTCTATGACCAAGTTCCAGATTCTATGAGAAGCCTAGGCATTGCCTTTTACCTT AGTGTAATTGGAGCTGCAAACTTCCTTAGTAGTCTCCTGATAACAGCTGTTGATCATGTGACTGAGAAAACCGGCAAGAGTTGGTTTGGAAAAGACTTGA ACAGTAGCCGCCTAGACAACTTTTACTGGCTTTTAGCCGGCATGACTGCAGCCAACTTAATTCTCTATGTGTTCTTGGCTCAGCGATATCCATACAAAAA TGTGCAGAGTAGCGTGGCTGTAGCTGACTGCTATAAGGATGGTCTGGAAGGTTCAATGGCCTGA
AA sequence Show only first row Show all	>Potri.006G092000.4 pacid=42767546 polypeptide=Potri.006G092000.4.p locus=Potri.006G092000 ID=Potri.006G092000.4.v4.1 annot-version=v4.1 MELKKGVETRGVNEEKWVHDSSVDHKGRVPLRASTGAWKASLFIIAIEFSERLSYFGIATSLIIYLSKVMHQDLKTAARSVNYWGGVTTLMPLFGGFLAD AYLGRFTTVFVSSIVYLLGLILLTMSAFVPSLKACEAAVCPKPRKVHEVVFFLAIYLISVGTGGHKPSLESFGADQFDENHDDERKKKMSYFNWWNFGLC CGLLLGVTVVVYVQDHVGWGAGDIIFTAVMALSLVIFIIGRPFYRYQVPTGSPLTPMLQVLVAAIRNRNLPYPSNPAELYEVPKSRTDKGRLLCHTESLK FLDKATIVKDREIGAENQNPWRLATVTKVEEMKLILNLIPIWLAMLPFGISVAQTATFFIKQGTTLDRNIGNGFQIPPASVYALAAIGMIVSVTIYEKIL VPVLRRATGNERGIKILQRIGFGMLFSISTMVVSALVERKRLGVVAKDPVKGSLSMSVFWLAPQFIIIGVGDAFTLVGLQEYFYDQVPDSMRSLGIAFYL SVIGAANFLSSLLITAVDHVTEKTGKSWFGKDLNSSRLDNFYWLLAGMTAANLILYVFLAQRYPYKNVQSSVAVADCYKDGLEGSMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37900			Major facilitator superfamily ...		Potri.006G092000 [exp]	0	1
AT3G11760			unknown protein		Potri.010G244100 [exp]	1.41	0.8676
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.010G135200 [exp]	1.41	0.8581
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	3.16	0.8292
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	3.87	0.8439
AT2G40460			Major facilitator superfamily ...		Potri.019G055800 [exp]	4.00	0.8419
AT1G49000			unknown protein		Potri.012G059500 [exp]	4.89	0.8289
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.004G212200 [exp]	5.19	0.8142
AT1G49310			unknown protein		Potri.004G153200 [exp]	6.70	0.7923
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	9.16	0.8042
AT1G12760			Zinc finger, C3HC4 type (RING ...		Potri.003G123300 [exp]	9.38	0.7747

Compare expression of checked genes

Potri.006G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.