Plant FIBer expression Database

Potri.006G092100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37920 243 / 2e-79 EMB1513 embryo defective 1513, copper ion transmembrane transporters (.1)
AT2G07750 93 / 2e-20 DEA(D/H)-box RNA helicase family protein (.1)
AT1G63250 92 / 3e-20 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G103600
[exp]
486 / 1e-173 AT2G37920 250 / 4e-82 embryo defective 1513, copper ion transmembrane transporters (.1)
Potri.001G107300
[exp]
91 / 5e-20 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Potri.003G124100
[exp]
82 / 5e-17 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002043
[exp]
263 / 1e-84 AT2G37920 259 / 4e-84 embryo defective 1513, copper ion transmembrane transporters (.1)
Lus10024339
[exp]
240 / 9e-76 AT2G37920 245 / 8e-79 embryo defective 1513, copper ion transmembrane transporters (.1)
Lus10034440
[exp]
86 / 4e-20 AT1G63250 161 / 1e-46 DEA(D/H)-box RNA helicase family protein (.1)
Lus10019121
[exp]
84 / 2e-19 AT1G63250 166 / 1e-48 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G092100.1 pacid=42767772 polypeptide=Potri.006G092100.1.p locus=Potri.006G092100 ID=Potri.006G092100.1.v4.1 annot-version=v4.1
ATGTCTCTCTCAATCCCAACGCTCCACCTCTCTTTCTCTAAAACCCTCTCATCCCAAAACCCTCTCTTCTTTCCAAAACCCTTCAGCCTCACTCTCCCTC
CTAAAACCACAATAATAATTCGAATGGGCGGAGGCCCAAGAACATTCCCTGGAGGAGTCTCCAAGTGGCAATGGAAACGAATGCAAAAAAATAAAGCTAA
ACAACTCCTAAAAGCTAGGCTTTGCCGGGAGAGACAGATTTACGAAATGAGAAAAAGGGCAGAGCTCAAAGCTGCTGTTTCTGAATTAGAGCGTCCTTGG
GAGGTTGTTGACAAAGCACCCAAGTTGTTTTCTGTAGGCGCTGATGAACAAGTTAAGGTTTTGGCTGACCGCTTTCAGAAACCAGGTGGGTTTGATTTGT
GGAGTGAAAGAGATGGTCCCCAGTTGTTTGAGACCCCTGATGGGGTTCCATCTGCCAGATTTTTTCCAACAGGTGTTGTTCAAACTGTGAAACCTTATGG
TAAGGTTTCTGCTTCTGGTTTTGGTGAATTGAGTGCTCGAATGCTGGATTCTGATTTTGGAAGCTACACTGAAAGTGAATATCAGAATGACGGAATGCCC
GTTAATGAGAAATTCAGTAATTTATTAGAAATTGAAGATGGGTCAGTTTCAGAGAGTGGATATAGGGGAAGTTCTGATGGGAAATTGGGGATGGATAAGA
GGAATGCAAAGAGAAATACTGGTAAATACAGGAAGAAGGGGGATAGGAGGAGATTTGGGAATGTTTCTAATGCATTTGATTCAGGGCAAGTTGGTTTTGA
GAAAGAGAAAAGAGTGGGTGGCACTACCAATCGCAGTGCTGGTCGTGATAATAGGATTAGTAGGAGTAACAATGGCAGTAGGATTAATAGGAATCGGAGA
GATTCCAAGTCTGATGTTTATGATATAAGTTTGCAACAGGATGGGAGTTATGGATTCCAAGTCGAGAATGAGAAGTTCAATTCTAGTTCTTGGGATGTGG
AGGCATTTGAGTTCGATTCATTCTAG
AA sequence
>Potri.006G092100.1 pacid=42767772 polypeptide=Potri.006G092100.1.p locus=Potri.006G092100 ID=Potri.006G092100.1.v4.1 annot-version=v4.1
MSLSIPTLHLSFSKTLSSQNPLFFPKPFSLTLPPKTTIIIRMGGGPRTFPGGVSKWQWKRMQKNKAKQLLKARLCRERQIYEMRKRAELKAAVSELERPW
EVVDKAPKLFSVGADEQVKVLADRFQKPGGFDLWSERDGPQLFETPDGVPSARFFPTGVVQTVKPYGKVSASGFGELSARMLDSDFGSYTESEYQNDGMP
VNEKFSNLLEIEDGSVSESGYRGSSDGKLGMDKRNAKRNTGKYRKKGDRRRFGNVSNAFDSGQVGFEKEKRVGGTTNRSAGRDNRISRSNNGSRINRNRR
DSKSDVYDISLQQDGSYGFQVENEKFNSSSWDVEAFEFDSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37920 EMB1513 embryo defective 1513, copper ... Potri.006G092100
[exp]
0 1
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.002G139400
[exp]
2.82 0.9762
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.005G105800
[exp]
3.16 0.9761
AT1G76730 NagB/RpiA/CoA transferase-like... Potri.005G194800
[exp]
3.87 0.9702
AT1G64940 CYP89A6 "cytochrome P450, family 87, s... Potri.015G006100
[exp]
5.00 0.9559 CYP89A22,Pt-ACT11.12
AT4G39620 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THAL... Potri.005G082400
[exp]
5.38 0.9542
AT4G01037 AtWTF1 what's this factor?, Ubiquitin... Potri.002G169300
[exp]
5.47 0.9727
AT2G47485 unknown protein Potri.002G200000
[exp]
8.12 0.9682
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.007G060400
[exp]
9.59 0.9721
AT1G32160 Protein of unknown function (D... Potri.003G097400
[exp]
9.79 0.9616
AT2G44760 Domain of unknown function (DU... Potri.002G138600
[exp]
9.94 0.9644

Potri.006G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.