Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02010 676 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 633 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 510 / 2e-175 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G38430 504 / 2e-173 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 459 / 4e-157 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 443 / 8e-151 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 406 / 1e-136 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT1G79860 396 / 7e-132 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT3G24620 395 / 1e-131 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 389 / 3e-129 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G104400 [exp] 1063 / 0 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.008G062000 [exp] 740 / 0 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 731 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.004G179742 [exp] 509 / 4e-175 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 503 / 1e-172 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 471 / 8e-162 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 468 / 1e-160 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 463 / 1e-157 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 456 / 7e-155 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021500 [exp] 800 / 0 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 795 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10040248 [exp] 655 / 0 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 653 / 0 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 644 / 0 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 630 / 0 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10023983 [exp] 485 / 2e-165 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 485 / 2e-165 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 438 / 5e-148 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 434 / 2e-146 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.006G092600.1 pacid=42769597 polypeptide=Potri.006G092600.1.p locus=Potri.006G092600 ID=Potri.006G092600.1.v4.1 annot-version=v4.1 ATGGAGGGTTTGATTGAGAAGAATAATGAACGTAACAGAGAGAAAGACACAAACTTTGGTGAAAAGAAAGGTGAAGTCCAGACATTTGGTGATTTGATTG AAGACAAATGTAGAGAAAGCAGTTCAAGTTCTGACTTTTTAACTTCCGAGGCCACAGGGAATGAGGAGCATGGTCATAGTAGCTCTGAAGAGGGCTCAAC TTCTCCTCATACAATGGGTTGGCCTGTACTGAAAGATGAAGCACCTGATTGCACAAATACCGATGGTGCAACTGATGATGAAGAGAAATCCCACTTTGAT GATAGGAAGTTGGGGAAACAAGGGTCTTCGGTTTCAGAGACTGAGATGATGAAGGAAAGGTTTTCAAAATTGCTGCTCGGAGAAGATATGTCTGGTTGTG GAAATGGGGTTTGTACAGCATTGGCGATCTCAAATGCCATTACTAATCTATGCGCTACCTTGTTCGGGCAACTATGGAGGTTGGAGCCTCTACCACTTGA GAAGAAAGCTATGTGGCGAAGAGAGATGGAATGGCTTCTTTGTGTGAGTGATCACATTGTGGAGTTGATGCCTTCTTGGCAGACATTTCCAGATGGAAGC AAGCTCGAGGTTATGACCTGCGGACCCAGATCGGATCTCTACATAAATCTTCCAGCTCTGCGCAAATTGGACAACATGCTTCTTGAGATATTAGATAGTT TTGACAATACTGAGTTCTGGTACGTCGACCAAGGGATCCTGGCCCCTGATACTGATGGGTCAGCCTCTTTCCGAAGAACCCTGCAGCGCCAAGAAGAGAA GTGGTGGCTACCTGTGCCTCAGGTACCTCCTGGAGGCCTCCATGAAAATTCAAGAAAGAAGTTGCAGCACAAACGTGATTCTACAAATCAAATATTGAAA GCTGCCATGGCTATCAACAGCATTACTTTAGCTGAAATGGAAATCCCTGAATCTTACTTGGAGGCTCTTCCAAAGAATGGAAAAGCCAGCCTAGGAGACC TCATCTATCGATATATTTCTTCAGATCAATTTTATCCAGAATGTCTCCTTGATTGCCTAGATTTGTCTTCTGAACATCAAGCTATAGAACTTGCGAACCG AGTGGAGGCCTCAATCTATATATGGCGCAAAAGAACCAATTATAAACCTGCCAGTAGTACAAATCGATCCAGTTCAAAGTCGTCATGGGAATTGGTCAAG GAACTGATGATTGATGCAGACAAGAGGGAATTGCTTGCTGATAGAGCAGAAAGCCTCCTACTTTGCCTGAAGCAGCGATTCCCTGGTCTTCCACAGACAA CTTTGGATATGAGCAAAATCCAGTACAACAAGGATGTTGGGAAATCCATTTTGGAGAGCTACTCGAGAGTCTTAGAGAGCTTGGCATTTAATATTGTGGC CCGAATTGACGACCTGCTCTACGTGGATGATTTGACAAAACATTCGGATCATTTCTCTTCAATCTCTAAAGTCAGTGTGATTGCTCACAAAAGTGTAACA ATTCCATACTCGGTCCCCGTCTCAAACACTCCATACAAAACAGCTTTCAACACACCAAGCTTTTCACCAGGTCAACAACGAATAAGCCCTGCAAAGGGAG ACCGATCGCCTTTCATGACCAGTGGCAAAATTCCTCAGCGTGGTTTAGGCGTAAAAAAGGTATTGACAGAGTATCTCAGTATAGATACAGAAGGCAGGGA TGGCGGCAACATGATCGAGGGAGCAGACAATGTGATTCGAAACACCTCGGCTTCTCAAACCGGAGTTGAATCTTTTGGGTCTATAATAGAAACAATCAGC TCACCCGAGAACAGATTTTCTGATATCTGCTAA
AA sequence Show only first row Show all	>Potri.006G092600.1 pacid=42769597 polypeptide=Potri.006G092600.1.p locus=Potri.006G092600 ID=Potri.006G092600.1.v4.1 annot-version=v4.1 MEGLIEKNNERNREKDTNFGEKKGEVQTFGDLIEDKCRESSSSSDFLTSEATGNEEHGHSSSEEGSTSPHTMGWPVLKDEAPDCTNTDGATDDEEKSHFD DRKLGKQGSSVSETEMMKERFSKLLLGEDMSGCGNGVCTALAISNAITNLCATLFGQLWRLEPLPLEKKAMWRREMEWLLCVSDHIVELMPSWQTFPDGS KLEVMTCGPRSDLYINLPALRKLDNMLLEILDSFDNTEFWYVDQGILAPDTDGSASFRRTLQRQEEKWWLPVPQVPPGGLHENSRKKLQHKRDSTNQILK AAMAINSITLAEMEIPESYLEALPKNGKASLGDLIYRYISSDQFYPECLLDCLDLSSEHQAIELANRVEASIYIWRKRTNYKPASSTNRSSSKSSWELVK ELMIDADKRELLADRAESLLLCLKQRFPGLPQTTLDMSKIQYNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKHSDHFSSISKVSVIAHKSVT IPYSVPVSNTPYKTAFNTPSFSPGQQRISPAKGDRSPFMTSGKIPQRGLGVKKVLTEYLSIDTEGRDGGNMIEGADNVIRNTSASQTGVESFGSIIETIS SPENRFSDIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.006G092600 [exp]	0	1
AT3G59110			Protein kinase superfamily pro...		Potri.002G059000 [exp]	5.00	0.9128
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	5.65	0.9122
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	9.64	0.9022
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	12.64	0.8881
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.009G074300 [exp]	14.69	0.8834
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	19.39	0.8836
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	19.49	0.8737	ATHB.12
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	19.89	0.8870	OMT1.1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.014G068400 [exp]	20.39	0.8767	Pt-GAE2.1
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	20.73	0.8831

Compare expression of checked genes

Potri.006G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.