Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60070 1356 / 0 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 1319 / 0 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G23940 405 / 1e-132 ARM repeat superfamily protein (.1) AT5G22770 265 / 4e-75 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 265 / 6e-75 Adaptor protein complex AP-2, alpha subunit (.1) AT1G31730 222 / 2e-60 Adaptin family protein (.1) AT1G48760 118 / 5e-27 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT4G31480 43 / 0.001 Coatomer, beta subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G104700 [exp] 1569 / 0 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 266 / 3e-75 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 263 / 3e-74 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G235200 [exp] 224 / 7e-61 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.012G055000 [exp] 118 / 6e-27 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 113 / 3e-25 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.001G101400 [exp] 49 / 2e-05 AT4G23460 1486 / 0.0 Adaptin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012988 [exp] 1406 / 0 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 1397 / 0 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030640 [exp] 1342 / 0 AT1G60070 1322 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030848 [exp] 1298 / 0 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10005371 [exp] 265 / 5e-75 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10020522 [exp] 265 / 6e-75 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 261 / 3e-73 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 260 / 4e-73 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10037271 [exp] 217 / 9e-59 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 216 / 3e-58 AT1G31730 1312 / 0.0 Adaptin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0159 [poplar] [flax] E-set PF02883 [poplar] [flax] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G092800.1 pacid=42768989 polypeptide=Potri.006G092800.1.p locus=Potri.006G092800 ID=Potri.006G092800.1.v4.1 annot-version=v4.1 ATGAATTCGTTCTTTTCCGGTACGCGTCTTAGGGACATGATTCGGGCAATACGGGCTTGTAAAACGGCGGCGGAGGAAAGAGCTGTTGTGAGAAAAGAAT GTGCTGCAATTCGAACGTCGATTAATGAAAATGATCAAGATTATAGACACCGGAATTTGGCAAAGCTTATGTTTATTCATATGCTTGGCTACCCAACACA TTTTGGTCAAATGGAGTGCTTAAAGTTGATTGCCTCCGCCGGATTTCCTGAAAAGAGGATCGGATATCTCGGCCTCATGTTACTTCTTGATGAAAGACAA GAAGTTCTAATGCTCGTTACCAACTCGCTAAAACAAGATCTTAATCATTCAAACCAGTATATTGTGGGACTTGCACTTTGTGCTTTGGGAAATATTTGTT CAGCAGAAATGGCTCGTGATCTTGCACCAGAAGTGGAAAGATTGCTGCAATTTCGGGATCCAAATATTCGGAAAAAGGCTGCATTATGCTCTATACGGAT TATTAGGAAAGTCCCGGATCTGGCAGAAAATTTTATAAATCCTGCGGCTGCCTTACTAAAAGAGAAGCATCATGGAGTCTTAATAACGGGAATTCAACTC TGTACAGATTTATGTAAAGTCAGTCCGGAAGCCCTCGAGTTTTTGAGAAAGAAACACACAGAAGGGTTGGTCAGAACTTTAAAGGATGTTGTTAACAGTC CATATGCACCGGAATATGACATTGCCGGTATCGCGGACCCTTTTCTCCATGTCAGATTGCTCAAACTTTTGCGTGCGTTGGGCCAAGGAGATGCTGATGC TAGTGATGCCATGAATGACATACTTGCTCAGGTGGCAACAAAAACTGAGTCAAACAAAAATGCTGGAAATGCTATTCTATATGAATGTGTTGAAACTATC ATGAGCATTGAAGATAATGGTGGCCTACGAGTGCTTGCTATTAATATCCTGGGAAGATTTTTGTCTAACCGTGACAATAATATCAGATATGTTGCATTAA ACATGCTGATGAAGGCTATTACTGTAGATGCTCAAGCTGTACAAAGGCATCGGGCAACAATCTTGGAATGTGTAAAGGATTCAGATGCTTCAATCAGGAA AAGGGCCCTTGAACTTGTTTACGTTCTGGTGAACGAGACCAATGTAAAACCTTTGACAAAAGAGCTAATTGATTATCTGGAAGTAAGTGATGAAGAATTT AAAGGGGATCTTACTGCCAAAATTTGCTCCATTGTTGAGAAGTTCTCCCCTGAGAAAATTTGGTACATTGATCAGATGCTCAAGGTTCTTGCTGAGGCTG GAAACTTTGTAAAAGATGAAGTATGGCATGCCCTTATTGTTGTGATAAGCAATGCTTCCGACCTTCATGGATATACAGTCAGGGCATTGTACAAAGCTTT CCAAACATCTTCTGAGCAGGAAAGCCTTGTTCGCGTAGCAGTTTGGTGCATTGGGGAATACGGTGACATGTTGATGAATAATGTTGGAATGCTTGCCATA GAGGATCCTGTAACTGTTACGGAGTCTGACATTGTGGATGTTGTTGAGATTGCTTTAAAGCACCATGCCTTAGACCTCACTACTAAAGCAATGGCTCTGA TTGCTCTCTTAAAACTTTCTTCCCGTTTCCCATCTTGTTCTGAAAGGATCAAGGATATAATTGTTCACCATAAAGGCAGCCTTGTGCTTGAATTGCAGCA AAGATCCCTTGAATTTAATTCCATCATTGAGAAGCATCAAAATATAAGATCTACACTGGTCGAAAGGATGCCAATTTTGGATGAGGCTACTTTCACTACA AGGAGGGCTGGTTCTTTGCCAGCAGCTGTTTCAACTTCTGGTGGGGCTTCCCTTAATCTTCCAAATGGAGTTGTGAAGCCCTCCACAGCTCCTCTTGTAG ATTTACTTGATCTTTCAGATGATGTTCCAGCAGCACCCGGCTCTTCTGGTGGTGATTTTCTTCAGGATCTTCTAGGTGTTGATTTGTCACCAGCTCCAAC ACAATCAGGCACAAACCAGGTTCAAAAAGCTGGCACAGATGTTCTACTGGATCTATTGTCAATTGGAGTGCCTCCTGTACAAAGCAGCTCATCTACAACT GACATTTTATCACCCATTCAAAATGAAAAATCACCAATAGCCACATTAGATGCACTCTCGTCATCTTCTTCACCTTCTGCACAAGCAACTTCTTCTGCTA GAGCTGCTCCAATGATGGATTTGTTGGATGGCTTCGGTCCCAGCCCATCAAAACCTGAGAATAATGGTTCAGTTTATCCACCTTTCGTGGCATTTGAGAG CAGCTCTTTGAGAATAACATTCAACTTCTCAAAGCAACCAGGAAACCCGCAAACAACATTAGTCCAGGCAACTTTCACAAACTTGACACCCAATGTCTTC ACCGATTTTATATTTCAGGCAGCAGTTCCAAAGTTTCTTCAACTGCACCTAGACCCAGCTAGCAGCAATATTCTTCCTGCAAGTGGTAATGGATCCATTA CACAAAATATGAGAGTTACTAATAACCAACACGGGAAGAAATCCCTCGTGATGCGCACAAGGATATCATACAAGATCAACAACAAAGATACACTGGAGGA AGGACACATAAACAATTTCCCGCGTGAGTTGTGA
AA sequence Show only first row Show all	>Potri.006G092800.1 pacid=42768989 polypeptide=Potri.006G092800.1.p locus=Potri.006G092800 ID=Potri.006G092800.1.v4.1 annot-version=v4.1 MNSFFSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRTSINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQ EVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIRKVPDLAENFINPAAALLKEKHHGVLITGIQL CTDLCKVSPEALEFLRKKHTEGLVRTLKDVVNSPYAPEYDIAGIADPFLHVRLLKLLRALGQGDADASDAMNDILAQVATKTESNKNAGNAILYECVETI MSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDSDASIRKRALELVYVLVNETNVKPLTKELIDYLEVSDEEF KGDLTAKICSIVEKFSPEKIWYIDQMLKVLAEAGNFVKDEVWHALIVVISNASDLHGYTVRALYKAFQTSSEQESLVRVAVWCIGEYGDMLMNNVGMLAI EDPVTVTESDIVDVVEIALKHHALDLTTKAMALIALLKLSSRFPSCSERIKDIIVHHKGSLVLELQQRSLEFNSIIEKHQNIRSTLVERMPILDEATFTT RRAGSLPAAVSTSGGASLNLPNGVVKPSTAPLVDLLDLSDDVPAAPGSSGGDFLQDLLGVDLSPAPTQSGTNQVQKAGTDVLLDLLSIGVPPVQSSSSTT DILSPIQNEKSPIATLDALSSSSSPSAQATSSARAAPMMDLLDGFGPSPSKPENNGSVYPPFVAFESSSLRITFNFSKQPGNPQTTLVQATFTNLTPNVF TDFIFQAAVPKFLQLHLDPASSNILPASGNGSITQNMRVTNNQHGKKSLVMRTRISYKINNKDTLEEGHINNFPREL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60070			Adaptor protein complex AP-1, ...		Potri.006G092800 [exp]	0	1
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.014G075500 [exp]	3.16	0.9241	Pt-EMB78.1
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.006G273300 [exp]	4.00	0.9121
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	4.35	0.9427
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	5.65	0.8930
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	6.92	0.9359
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	9.32	0.9359
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	9.79	0.9075
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.005G026900 [exp]	11.83	0.8905
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	13.56	0.9251	LAC110c
AT5G60980			Nuclear transport factor 2 (NT...		Potri.015G058700 [exp]	15.00	0.9046

Compare expression of checked genes

Potri.006G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.