Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37840 873 / 0 Protein kinase superfamily protein (.1.2) AT3G53930 859 / 0 Protein kinase superfamily protein (.1.2) AT3G61960 469 / 3e-157 Protein kinase superfamily protein (.1.2) AT1G49180 256 / 2e-78 protein kinase family protein (.1.2) AT2G30360 190 / 3e-53 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT2G25090 178 / 1e-48 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT1G30270 178 / 1e-48 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G01810 174 / 4e-48 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT3G01090 177 / 8e-48 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT1G01140 175 / 1e-47 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G104900 [exp] 1228 / 0 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 466 / 2e-155 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 453 / 3e-150 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G007200 [exp] 282 / 1e-89 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011600 [exp] 281 / 1e-88 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 256 / 9e-80 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.006G263500 [exp] 181 / 1e-49 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G019900 [exp] 180 / 1e-49 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.016G133900 [exp] 176 / 4e-48 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021493 [exp] 1023 / 0 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 1023 / 0 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 362 / 1e-115 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 362 / 2e-115 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 291 / 7e-93 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 249 / 7e-75 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10009103 [exp] 186 / 1e-51 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10025245 [exp] 183 / 1e-50 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10021852 [exp] 177 / 9e-49 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007448 [exp] 175 / 1e-47 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G092900.1 pacid=42768195 polypeptide=Potri.006G092900.1.p locus=Potri.006G092900 ID=Potri.006G092900.1.v4.1 annot-version=v4.1 ATGGCTCAGGCTTCAGGGAGGAGCGGCAGGGTTGTTGGAGACTACTTGGTGGGTAGACAAATAGGGTCGGGCTCTTTCTCGGTGGTTTGGCACGCTAGAC ATCGAGTCCATGGAACCGAAGTAGCGATAAAAGAGATCGTTACGAATCGACTTAATAAGAAATTACAAGAAAGTCTCATGTCTGAAATTTTTATTTTGAA GAGGATCAATCATCCTAATATCATTCGCTTGCACGATATTATTAAGGTTCCGGGGAGAATACTTATAGTATTGGAGTATTGCGAGGGTGGTGATCTGTCT ATGTATATCCAACGCCATGGGAAAGTTCCAGAAGCAATTGCTAAGCACTTCATGCAACAATTAGCTGCTGGTTTGCAAATTCTCCGGGACAATAATTTGA TTCATCGGGATCTTAAGCCGCAGAATCTCCTTCTCTCCACGAGTGACAATAATGCGGTTCTGAAAATTGCAGACTTTGGATTTGCCAGATCTCTACAACC TCGAGGCCTTGCAGAAACCTTGTGTGGCTCACCCCTCTACATGGCTCCAGAGATAATGCAACTTCAGAAGTATGATGCAAAGGCAGATCTCTGGAGTGTT GGTGCCATTTTATTTCAGCTTGTGACAGGAAAAACCCCATACACTGGAAACAATCAAATACAGTTGCTCCAGAACATTGTGAAATCAGCTGAATTGCAAT TTCCTTTCGATAATAAGGATTTGAGTGCTGGCTGCAAAGATTTATGCCGGAAATTGCTGTGTTGCAATCCAGTGGAACGGCTAACCTTTGAGGAGTTCTT TAATCACCCATTTCTTTCTCAAAGGAAAAAAGACGAATTACTGAGGTCTTCAAGGTCAGTAGATGGCTTTCCTTTCTCTGGAAGCAATCCTGCAAGGAAT GCTGATGACAATTCTCAGGAGGATTGCCTGCCTTTCCTTCTGGATGATGATTCTAGTTGTCCTGAGGGTAGCCCTTCTGTTTCCAAGAGGATGTCCCCAA TGAAGTCTACATATGGATTTTCTCTTGATTCAAGAATTGGAGGGAGGGATGCAACATCTAATGTTTTTAATAACGTGGATCTTACTTCCAGATATAGTAG TGCCAGACAGAACTTAGAAAATGCTAGTTTTAGGCCTGGCATCAATAAAGCATCAGATGAAAATCTAAATGAACCTCCAAAATCCATAGACCAGAGATCA GTGAACATCCGATCAAGAGTTGTGGATTCACTGGATTTGATAGATCAAGATTATGTTCTTGTTTCTGGACCCCCTTTGAATGTGTCATCTTCCACAGCAA GTACTTACAAACCAGGCAATGCACCATACAAGTCAGAGGGTCCCTCTCAAGCATTTACCTACACAAACACTAGGCTAAGTATCCCGGTGCCCATAATTGA CACTGCCAACAATAATCCTTGCCGCTTTGGAAGCTTGGAAATTCCGGCCTCTGCTCCTGGGACTTCTGAAGGATCTTTGGATATGGGAGATGCTTTGGAG CAGCCATCAACTCACTGCATGACTAGGATTAAGTCATTGCAGCATTGTGCATCTGCCATAATGGAACTAGTGGTGGAAAAGATTAAGGCAGGTAGGCAAC TAGAAGCATTTTCGATCCAACTTGTTATTCTTGCGATTTGGAAGCAAGTACTGCACATCTGCCATACTCAGGCTGCCTCAGCTATCGAAGGAAGTCCAAG CCAAGAGAGCTCAAGACTGAGGAGAAGCAGCAGCAAGAAGCATGGGAACCCTGATACAGAAGATTGTCCTGATGTTGGGCCAGAGAATATGTCCACTCAG ATTGAGGCGGAATTTTTACAGGAAGTTGAGCGGGCAGAGGAACTTGCCAAGGCTATCGAAACTGGAAGTACGGAGATGCCTGATGCAATGGAGATGATAT TTCAATCTGCCCTTTCTCTGGGAAGACATGGAGGGGTTGACGAGCTCATGGGGAATATGGAAAATGCAGCTTTGCTATATTCAAGAGCAGGATGTTTGTT AGTTTTCCTTCTAGTGGAAGCACCATCTCTTATTCTCAATCCTCCATTTTCTCTCACGAACTCGGATCGGTATAGGCTCCGCAGTTACATAGATATCCTT AATAACAGGCAAGACCATTCACGATCCCAAAGGATGGCACTTCTCAAATGCGAGGATCAACGATGGTCACCATAG
AA sequence Show only first row Show all	>Potri.006G092900.1 pacid=42768195 polypeptide=Potri.006G092900.1.p locus=Potri.006G092900 ID=Potri.006G092900.1.v4.1 annot-version=v4.1 MAQASGRSGRVVGDYLVGRQIGSGSFSVVWHARHRVHGTEVAIKEIVTNRLNKKLQESLMSEIFILKRINHPNIIRLHDIIKVPGRILIVLEYCEGGDLS MYIQRHGKVPEAIAKHFMQQLAAGLQILRDNNLIHRDLKPQNLLLSTSDNNAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSV GAILFQLVTGKTPYTGNNQIQLLQNIVKSAELQFPFDNKDLSAGCKDLCRKLLCCNPVERLTFEEFFNHPFLSQRKKDELLRSSRSVDGFPFSGSNPARN ADDNSQEDCLPFLLDDDSSCPEGSPSVSKRMSPMKSTYGFSLDSRIGGRDATSNVFNNVDLTSRYSSARQNLENASFRPGINKASDENLNEPPKSIDQRS VNIRSRVVDSLDLIDQDYVLVSGPPLNVSSSTASTYKPGNAPYKSEGPSQAFTYTNTRLSIPVPIIDTANNNPCRFGSLEIPASAPGTSEGSLDMGDALE QPSTHCMTRIKSLQHCASAIMELVVEKIKAGRQLEAFSIQLVILAIWKQVLHICHTQAASAIEGSPSQESSRLRRSSSKKHGNPDTEDCPDVGPENMSTQ IEAEFLQEVERAEELAKAIETGSTEMPDAMEMIFQSALSLGRHGGVDELMGNMENAALLYSRAGCLLVFLLVEAPSLILNPPFSLTNSDRYRLRSYIDIL NNRQDHSRSQRMALLKCEDQRWSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37840			Protein kinase superfamily pro...		Potri.006G092900 [exp]	0	1
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.001G057800 [exp]	7.48	0.8067
AT5G42220			Ubiquitin-like superfamily pro...		Potri.002G013500 [exp]	7.48	0.8659
AT5G07610			F-box family protein (.1)		Potri.008G016150 [exp]	7.74	0.8145
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Potri.016G086600 [exp]	7.81	0.7453
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	9.48	0.8467
					Potri.017G022262 [exp]	9.48	0.8077
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	14.00	0.7875
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	15.49	0.7860
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	16.52	0.7788
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	20.61	0.7732	WNK8.2

Compare expression of checked genes

Potri.006G092900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.