Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37925 114 / 2e-33 COPT4 copper transporter 4 (.1) AT5G59040 107 / 2e-30 COPT3 copper transporter 3 (.1) AT2G26975 107 / 2e-30 Ctr copper transporter family (.1) AT5G59030 100 / 2e-27 COPT1 copper transporter 1 (.1) AT3G46900 95 / 2e-25 COPT2 copper transporter 2 (.1) AT5G20650 50 / 4e-08 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038700 [exp] 123 / 1e-36 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.009G038800 [exp] 106 / 9e-30 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.006G093200 [exp] 97 / 1e-26 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.001G246000 [exp] 91 / 7e-24 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.006G140700 [exp] 58 / 2e-11 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 53 / 2e-09 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021108 [exp] 121 / 9e-36 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10040726 [exp] 119 / 9e-35 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10016464 [exp] 111 / 1e-31 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10017204 [exp] 85 / 4e-22 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10021107 [exp] 77 / 1e-18 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017205 [exp] 75 / 9e-18 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1) Lus10016463 [exp] 71 / 9e-17 AT2G26975 92 / 5e-25 Ctr copper transporter family (.1) Lus10023045 [exp] 67 / 1e-14 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10016462 [exp] 64 / 2e-14 AT5G59030 76 / 3e-19 copper transporter 1 (.1) Lus10032428 [exp] 65 / 8e-14 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [poplar] [flax] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G093300.2 pacid=42770557 polypeptide=Potri.006G093300.2.p locus=Potri.006G093300 ID=Potri.006G093300.2.v4.1 annot-version=v4.1 ATGGGAGATCATGAGGTGATGATGCCACACCACGGTACCACCGTATCTTCTTCTCTGACAGAAGCGTGGGACACCACAGGCTTCACGCATCCCCACCGCA AAATGATGATGCACATGACCTTCTTTTGGGGCCATAAAACAGAAGTTCTTTTCAAAGGTTGGCCTGGTTCAAGCACTGGGATGTATGCTGTGGCCTTGAC CTTTGTCTTTGCTCTTGCAGTCCTTGTGGAGGTGTTCAGTCTTTTCAGTGTCATCAAGCCAGGAACTAACAAGGCTGCTGCAGGCTTCTTTCAAACTGGA ATGTATGCAGTGCGTTCTGGGCTGTCTTACATGGTAATGCTCGCTGTCATGTCGTTTAATGGAGGTGTCTTTCTTGCGGCAGTGGGTGGCCATGCAGTTG GCTTCGCTCTTTTTGGGGGTCGGGCTAAGAAGTCTGGTGGCTCTTGA
AA sequence Show only first row Show all	>Potri.006G093300.2 pacid=42770557 polypeptide=Potri.006G093300.2.p locus=Potri.006G093300 ID=Potri.006G093300.2.v4.1 annot-version=v4.1 MGDHEVMMPHHGTTVSSSLTEAWDTTGFTHPHRKMMMHMTFFWGHKTEVLFKGWPGSSTGMYAVALTFVFALAVLVEVFSLFSVIKPGTNKAAAGFFQTG MYAVRSGLSYMVMLAVMSFNGGVFLAAVGGHAVGFALFGGRAKKSGGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37925		COPT4	copper transporter 4 (.1)		Potri.006G093300 [exp]	0	1
AT1G14730			Cytochrome b561/ferric reducta...		Potri.010G102400 [exp]	1.41	0.9889
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.015G030200 [exp]	2.00	0.9881	NAC017
					Potri.016G136800 [exp]	2.82	0.9857
AT1G77700			Pathogenesis-related thaumatin...		Potri.002G087100 [exp]	3.16	0.9834
AT1G53035			unknown protein		Potri.013G130100 [exp]	3.46	0.9826
AT1G23530			unknown protein		Potri.010G041600 [exp]	5.74	0.9870
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153000 [exp]	7.48	0.9816
					Potri.014G093600 [exp]	8.48	0.9677
AT5G41470			Nuclear transport factor 2 (NT...		Potri.002G070800 [exp]	9.16	0.9825
					Potri.005G001001 [exp]	12.68	0.9663

Compare expression of checked genes

Potri.006G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.