Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01030 218 / 9e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G29510 181 / 7e-47 Protein of unknown function (DUF3527) (.1) AT5G59020 179 / 1e-46 Protein of unknown function (DUF3527) (.1) AT2G37930 168 / 1e-44 Protein of unknown function (DUF3527) (.1) AT1G04490 74 / 2e-13 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G33360 72 / 1e-12 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G63520 71 / 3e-12 Protein of unknown function (DUF3527) (.1) AT4G11450 50 / 6e-06 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105500 [exp] 1234 / 0 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.009G039300 [exp] 284 / 1e-81 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 277 / 5e-79 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.010G066200 [exp] 72 / 1e-12 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.008G171400 [exp] 72 / 2e-12 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.003G127500 [exp] 63 / 7e-10 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.001G104200 [exp] 58 / 4e-08 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021110 [exp] 303 / 4e-89 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10017200 [exp] 303 / 5e-89 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10016455 [exp] 173 / 2e-44 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10040721 [exp] 167 / 2e-42 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1) Lus10014479 [exp] 77 / 2e-14 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10023729 [exp] 76 / 7e-14 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF12043 [poplar] [flax] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Potri.006G093600.2 pacid=42769052 polypeptide=Potri.006G093600.2.p locus=Potri.006G093600 ID=Potri.006G093600.2.v4.1 annot-version=v4.1 ATGGAAGGGTCCAAAATGTCATCTGATGTGAAATCAAGTCGTACATGCTCAGAACCTTCCAGTGAAAGGGGATTCGGTTTGGAGCTCAAGAAGAGTTCTA GATGGCAGCAACATTTGGATACTGCTCTTCCAACCCAAGCAATGCAGAGTCTAAAACATCAAGACAAGTTGAAAGCAAAATATTATGGTAGTCAGCGATG TGTTGACATGCCTCGTGAACTGAAACTTCATGCAAATGATAGGATCTTGGTCCAACCAAAAACTTCAGGGAACAACCACCAGCTGCACTCTGTCAAGAGA AATTCAAGAAAGGATGACGAGCTTGTAAAGTATATGTCAGATTTGCCAGGTTATCTCCAGCGCATGGAGAGAAGTGAAAGTATACAGGATAAGGCTTTGA ATGTTGGAGTTTTGGACTGGTCACGTCTAGAGAAATGGAGGATTGCAGCAAGTTATAGCAATAGCACATCATTGACTAGCAGCAATTTGCCAAGTAAAAT TACTATGAAGTCCGCTACTCCAAATGCGGTTCGCAATAACACTCTCGCTCACCGAAGCAAGCAGCATCCTTCTCTTTCTTCAAGTCTGAACTCTTCTCAC AGAGACCATGTTTCTCGAGCTTCCAAACCTCCTATCCAGAATGCTTCATGCTTTCAAGATTTTGAAACTTCTTCCAAGAGCAGTGTGAACGGGCAGAAAA AAGTACGAAGGACCAACAAGTCTGTTGGCAGAAATAATTCAGATGTCATTCTTGAACAGGGGAAAAGAGAAGATGTAAATCAGAAGATCACTTCTAAAGT TAGAAGTCGGTCTTCAAACTCAAGATATGACAGTATCTCAATCAGGTCCAAGGTGAATATGAGCGCTTGTGACAGTGCGGCCGAGAAGAGAGCTGGGGAG AAGGAAGGGCTAGAAGTAAAGAGAAAACCATTGGATCAGACGATTACATCAAGGATCAGAGCTCCATCATCACAGTTGAGAAGCCATGATGTTTCGCCCA GTTCTAAGGCAAAGAATGTTGCTGATGGTAAAACTAAGAAGGGAATAGAGGAGTTGCAGGAATCTTCTATTGATCTTTCTCCTCAACACCAATCCATGGA GAACAACATAGTTCTCCTTGTACCAAAAAAGTTCCCCGCAAATTGCTCCCTTCAGGAACCAAGGACACCGCTGGATAAGGATTTGAATGAAACACACCGA CGGAGCTTGTCAGATGTCTTTTCTCATGTGGAAGCTCAGTCTTCAGAACCTTCTGAAATTCTGCACCCATGCTCGCTGATTTCTAGAAAGGAAACTGACA CAGAACCCCACAAATCGCTGCACGCTGCAATGGTTACACGGGGTGCAGAGACGTCAGCTGATGCATCCGACACATCTGCATGTTCAAGTAAGATGCCAAT TAGACTGTCTGAAGATAAATTTGCAGGAGAGAGCAGTGGTAGGGCTGCGAAAGGAAGTGTAATTGAAACTTCAAATACTTTGGATCAAGAAACAATGGAA GTGATGGCAAGAAAAGGCAGGCATCCTTCACCAAATCGCCGGTTTAGCTTCAGCTTAAGTCGAATGAGTAGGAGTTTCAGCTTCAAGGAGAGTTCAACTG TCCCACAGTTGAGCTCCACCTACATTTCCACGAAGTCTGGCCCCGTGATATCCGAAGGTTTTGCTTGTTTGGATAATTCAAACAGAGAGAAGGCAAGTGG TCATAACAGAGCTAGATCCAGCCCGTTGAGAAGGATGCTAGATCCTCTGCTGAAGTCCAGGAGCTCGAGGACACTTCTTTCAGCTGAAAATGACTCTTTA AAGGATAGCTTGAATTCCTTCAACTTGAAGCGATTTGATGCTACTGAACCACTTAAGGATGAAAAGCATGAGCCACCAAGAATAAAAGCTCTCCTGCAAC TTACAATAAGGAACGGAGTTCCTTTGTTCAGATTTGCGGTTGGCAACAATAGCAACATTCTTGCAGCCACCATGAACAAGTTATCATCACCTCAGAAGAA TGATTCAGGCTGCGACTATACATTCTATACAATTGATGAAATCAAGAAAAAGAGTGGTAGCTGGATAAATCAAGGTAGTAAAGAGAAGAGTTGTGGCTAT ATCTACAATGTGATTGGCCGCATGAAGGTTAATAATAGCTCTTCTATCTCTGCTTTGACTGGACCAAGCTCTATTTGCCAGATTAAGGTGAAAGAGTCTG TTTTGTTTGGTGTCGACCTAAGTCAGGCAGATCAGGCATCGCCAAGGTTCGTGGCAAATAGGGAGCTTGCAGCAGTTGTTGTCAAAATGCTTAATGAAAT CTCAGGCCTTGACCTGCGGCAGACTGATCAAAATGATAACTTGATGCACAAGGGCTCCTCACAGTGCCTTCCAGAAAGTCAATGTTCTGGTAACTTGGGA AAAACTGAACACTCAAATAGTGCTACTACTGTCATACTTCCCGGTGGTAATCATAGCTTGCCAAACGAGGGAGTTCCTTCTCCATTGATACATCGGTGGA GATCTGGTGGATCATGCGACTGTGGAGGTTGGGATGTTGGTTGTAAACTACGCATACTCTCCAATGGAAGCCAGTGTAATGAGATTCCAAGGACATCCAA AAGTTGCCTTATGCCAGATTGTTTTGAACTTTTCTCTGAGGGAGCAAACCAACAAGATCAGCCTATCTTCAGTTTGGCACAAGTGGAAAAGGGAATGTAT TCGATTGAATTCAGTTCATCAATTTCTTCATTACAGGCATTCTTCATTGGTGTCACGGTTATAAGCTGTCAAAAATCAACTGATCTTCTGGATGTCAGCA ATGCTTCCGGTGAAAAGTTTCAACAGGAACCAAGGAACTCCAGTGATGTAACAAAGACGATCCACACCATGCCCTCAGGGAAGACACATGTGAAATACAC TCTAAGCCCCCCTCTTTCCCCTTTTGAAAGGGTGTAG
AA sequence Show only first row Show all	>Potri.006G093600.2 pacid=42769052 polypeptide=Potri.006G093600.2.p locus=Potri.006G093600 ID=Potri.006G093600.2.v4.1 annot-version=v4.1 MEGSKMSSDVKSSRTCSEPSSERGFGLELKKSSRWQQHLDTALPTQAMQSLKHQDKLKAKYYGSQRCVDMPRELKLHANDRILVQPKTSGNNHQLHSVKR NSRKDDELVKYMSDLPGYLQRMERSESIQDKALNVGVLDWSRLEKWRIAASYSNSTSLTSSNLPSKITMKSATPNAVRNNTLAHRSKQHPSLSSSLNSSH RDHVSRASKPPIQNASCFQDFETSSKSSVNGQKKVRRTNKSVGRNNSDVILEQGKREDVNQKITSKVRSRSSNSRYDSISIRSKVNMSACDSAAEKRAGE KEGLEVKRKPLDQTITSRIRAPSSQLRSHDVSPSSKAKNVADGKTKKGIEELQESSIDLSPQHQSMENNIVLLVPKKFPANCSLQEPRTPLDKDLNETHR RSLSDVFSHVEAQSSEPSEILHPCSLISRKETDTEPHKSLHAAMVTRGAETSADASDTSACSSKMPIRLSEDKFAGESSGRAAKGSVIETSNTLDQETME VMARKGRHPSPNRRFSFSLSRMSRSFSFKESSTVPQLSSTYISTKSGPVISEGFACLDNSNREKASGHNRARSSPLRRMLDPLLKSRSSRTLLSAENDSL KDSLNSFNLKRFDATEPLKDEKHEPPRIKALLQLTIRNGVPLFRFAVGNNSNILAATMNKLSSPQKNDSGCDYTFYTIDEIKKKSGSWINQGSKEKSCGY IYNVIGRMKVNNSSSISALTGPSSICQIKVKESVLFGVDLSQADQASPRFVANRELAAVVVKMLNEISGLDLRQTDQNDNLMHKGSSQCLPESQCSGNLG KTEHSNSATTVILPGGNHSLPNEGVPSPLIHRWRSGGSCDCGGWDVGCKLRILSNGSQCNEIPRTSKSCLMPDCFELFSEGANQQDQPIFSLAQVEKGMY SIEFSSSISSLQAFFIGVTVISCQKSTDLLDVSNASGEKFQQEPRNSSDVTKTIHTMPSGKTHVKYTLSPPLSPFERV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	0	1
AT3G52890		KIPK	KCBP-interacting protein kinas...		Potri.006G114900 [exp]	1.41	0.7473
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.011G165200 [exp]	1.73	0.7650
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	4.24	0.7382
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	5.29	0.7108
AT2G14120		DRP3B	dynamin related protein (.1.2....		Potri.012G125300 [exp]	6.32	0.7295
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	9.48	0.7139
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	13.00	0.6858
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	16.24	0.7082
AT3G08840			D-alanine--D-alanine ligase fa...		Potri.006G106000 [exp]	19.89	0.6946
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	21.02	0.6504

Compare expression of checked genes

Potri.006G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.