Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37940 490 / 2e-176 ERH1, AtIPCS2 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) AT3G54020 489 / 6e-176 AtIPCS1 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) AT2G29525 416 / 2e-147 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105700 [exp] 612 / 0 AT3G54020 493 / 1e-177 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.001G246300 [exp] 400 / 2e-140 AT3G54020 374 / 2e-130 Arabidopsis Inositol phosphorylceramide synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035551 [exp] 518 / 0 AT3G54020 490 / 2e-176 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10027742 [exp] 513 / 0 AT3G54020 477 / 6e-171 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10021111 [exp] 493 / 1e-177 AT3G54020 462 / 1e-165 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10017199 [exp] 493 / 2e-177 AT3G54020 462 / 7e-166 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10040720 [exp] 403 / 4e-141 AT2G29525 399 / 6e-140 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF14360 [poplar] [flax] PAP2_C PAP2 superfamily C-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G093800.1 pacid=42766897 polypeptide=Potri.006G093800.1.p locus=Potri.006G093800 ID=Potri.006G093800.1.v4.1 annot-version=v4.1 ATGAGTCTTTACATTGGTCGCGAGGCTTCTAAGTTATGGAAGAGAATATGTGCAGAGACGACAACAGAGATCAATTTACTTGCAGATAATTGGAAATACA TTCTTGGAGGTTTAATTTTTCAGTACATTCATGGTTTGGCTGCCCGAGGAGTTCATTATCTACATCGCCCAGGGCCAATATTGCAGGATGTTGGGTTCTT TCTTCTTCCGGAGCTTGGGCAAGATAAAGCCTACATTAGTGAGACGCTGTTCACCACTGTCTTTCTATCCTTTGTTGTGTGGACTTTCCATCCTTTCATC CTCAAGAGCAAAAAGATCTACACAGTTCTAGTTTGGTGCAGGGTTCTTGCATTTCTAGTTGCTTCTCAATTTCTCCGGATCATCACATTCTATTCCACCC AGCTTCCAGGTCCAAATTATCATTGTCGTGAGGGATCAAAACTTGCCAGGTTGCCACATCCACAAAGTCTATTCGAAGTACTCTTAATGAATTTTCCTCG GGGCATCACACATGGTTGCGGTGATTTGATTTTCTCATCACACATGATATTTACTCTAGTCTTTGTTCTCACATATCAGAAGTGCGGCACAAAAAGGTGT ATAAAGCAGTTAGGTTGGCTTATTGCTGTAGTTCTGAGCTTTTTGATTATAGCATCACGCAAGCATTACACTGTGGATGTCGTTGTAGCATGGTACACTG TTAATTTGGTGGTATTCTTTCTAGACAAGAAATTACCAGAGCTACCTGATCGGACTGGCGGTGCTTCTCTCTTATTGCCATTAAGTAACAAAGACAAGGA TAGCAAGACCAGAGAAGAGAACCACAAGCTCTTGAATGGGAACTCAGTAGACCCTGCAGATTGGAGGCAGAGAACCCAAGTCAATGGCAAGATTCTGGAC GACGCCAATTTAGTCCATGCTGATGCTACTTCAATGAACGGTGCATAG
AA sequence Show only first row Show all	>Potri.006G093800.1 pacid=42766897 polypeptide=Potri.006G093800.1.p locus=Potri.006G093800 ID=Potri.006G093800.1.v4.1 annot-version=v4.1 MSLYIGREASKLWKRICAETTTEINLLADNWKYILGGLIFQYIHGLAARGVHYLHRPGPILQDVGFFLLPELGQDKAYISETLFTTVFLSFVVWTFHPFI LKSKKIYTVLVWCRVLAFLVASQFLRIITFYSTQLPGPNYHCREGSKLARLPHPQSLFEVLLMNFPRGITHGCGDLIFSSHMIFTLVFVLTYQKCGTKRC IKQLGWLIAVVLSFLIIASRKHYTVDVVVAWYTVNLVVFFLDKKLPELPDRTGGASLLLPLSNKDKDSKTREENHKLLNGNSVDPADWRQRTQVNGKILD DANLVHADATSMNGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37940		ERH1, AtIPCS2	enhancing RPW8-mediated HR-lik...		Potri.006G093800 [exp]	0	1
AT4G00300			fringe-related protein (.1.2)		Potri.014G088100 [exp]	2.44	0.8273
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.004G001300 [exp]	2.44	0.8597	CES1.1
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	2.64	0.8667
AT1G18210			Calcium-binding EF-hand family...		Potri.012G048200 [exp]	4.47	0.8451	Pt-CBL1.1
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Potri.018G143100 [exp]	5.74	0.8150
AT2G46140			Late embryogenesis abundant pr...		Potri.002G165000 [exp]	10.67	0.8535	PM22.2
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.018G092100 [exp]	12.00	0.7866	PSC450.1
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	13.41	0.8461	Pt-RSH2.3
AT5G58950			Protein kinase superfamily pro...		Potri.005G082200 [exp]	20.24	0.8156	Pt-PK1.1
AT3G07790			DGCR14-related (.1)		Potri.002G222100 [exp]	21.42	0.8172

Compare expression of checked genes

Potri.006G093800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.