Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54030 844 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 837 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G00710 753 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 750 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 730 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G35230 656 / 0 BSK1 BR-signaling kinase 1 (.1) AT1G01740 639 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G09240 629 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 600 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 598 / 0 BSK2 BR-signaling kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105800 [exp] 995 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 851 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 837 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.014G082400 [exp] 780 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 769 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.001G104700 [exp] 746 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.003G126700 [exp] 743 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.004G182800 [exp] 649 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 642 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027743 [exp] 886 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 885 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 803 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10008530 [exp] 764 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10016454 [exp] 764 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10008494 [exp] 762 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 742 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10030383 [exp] 715 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10037856 [exp] 711 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 687 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G093900.2 pacid=42767055 polypeptide=Potri.006G093900.2.p locus=Potri.006G093900 ID=Potri.006G093900.2.v4.1 annot-version=v4.1 ATGGGAGCCCGCTGCTCCAAATTCTCTCTCTGCTGGTTCCAGTCTCACCTTAAGGCTTCAGTCCTCGAATCCTCCGATCTCGAAAATGGGGGCAAAAGTG ACAGAAATGCATTCCCGAGTTTCACCGAGTTCAGTTTCGAACAACTGAAAGCAGCCACGTCTGGGTTCTCTTCGGACAACATAGTATCGGAACATGGTGA AAAAGCTCCGAACGTTGTTTACAAAGGGAAACTAGACAATGACCGTTGGATCGCCGTTAAACGATTTAACCGACTCGCCTGGCCTGATTCTCGCCAATTC CTCGAGGAAGCGAGAACAGTGGGGAGTTTGAGGAGTGAGAGATTGGCGAATTTGATAGGATGTTGCTGTGAAGGAGAGGAGAGGCTGCTAGTTGCTGAGT TTATGCCTCATGAAACCCTTGCTAAGCATCTTTTTCACTGGGAGAGCCAGCCCATGAAATGGGCAATGAGGTTGAGGGTAGCCCTGTACTTGGCACAAGC TCTGGAATACTGTTGCAGCAAAGGAAGGGCGTTGTATCATGATCTCAATGCCTACAGGATCTTATTTGATAAGGATGGTAATCCTAGGCTATCTTGCTTT GGCCTCATGAAGAATAGTCGTGATGGCAAAAGTTACAGTACAAATTTGGCTTTCACCCCGCCAGAGTACTTGAGAACTGGTAGAGTGACGCCTGAAAGTG TAGTTTACAGCTTTGGAACCTTGTTGTTGGATCTTCTGAGTGGCAAACATATTCCTCCAAGTCATGCACTTGACCTGATTCGTGGCAAAAATTTCCTGAT GTTGATGGATTCTGCTCTAGAAGGCCATTTTTCAAAAGATGATGGAACAGAGTTGGTTAGATTAGCTTCCCGTTGTTTGCAGTATGAAGCTCGTGAAAGG CCAAATGCTAAATCCCTTGTCACTGCACTTTTGTCACTTCAAAAAGAAACAGAGGTCCCGTCATATGTTTTAATGGGCATCCGACAAGAAACTGCATCAT CAACTCAGCCTTTGTCATTGACTCCTTTTGGTGAGGCATGCTTGAGAACGGATCTCACTGCTATACATGAAATACTGGAAAAGATTGGATACAAGGATGA TGAGGGGATTGCAAATGAGCTTTCTTTCCAAATGTGGACTAATCAAATGCAAGAGACCCTGAATTCTAAGAAGCATGGAGATACTGCTTTTCGAGCAAAG GATTTTGCGACTGCCATTGATTGCTACACTCAATTCATCGATGGCGGAACCATGGTGTCACCAACTGTGTATGCTAGGCGTTGCTTATCTTACTTAATGA GTGACATGCCACAAGAAGCTCTAGGGGATGCTATGCAAGCCCAAGTGGTGTCTCCTGAGTGGTCCACTGCCTCGTACCTTCAAGCAGCTTGCCTTTTCAG CCTTGGAATGGAGACTGATGCACAAGAAACACTCAAAGATGGCACAAACTTGGAAGCCAAAAGAAACAAAAACTGA
AA sequence Show only first row Show all	>Potri.006G093900.2 pacid=42767055 polypeptide=Potri.006G093900.2.p locus=Potri.006G093900 ID=Potri.006G093900.2.v4.1 annot-version=v4.1 MGARCSKFSLCWFQSHLKASVLESSDLENGGKSDRNAFPSFTEFSFEQLKAATSGFSSDNIVSEHGEKAPNVVYKGKLDNDRWIAVKRFNRLAWPDSRQF LEEARTVGSLRSERLANLIGCCCEGEERLLVAEFMPHETLAKHLFHWESQPMKWAMRLRVALYLAQALEYCCSKGRALYHDLNAYRILFDKDGNPRLSCF GLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARER PNAKSLVTALLSLQKETEVPSYVLMGIRQETASSTQPLSLTPFGEACLRTDLTAIHEILEKIGYKDDEGIANELSFQMWTNQMQETLNSKKHGDTAFRAK DFATAIDCYTQFIDGGTMVSPTVYARRCLSYLMSDMPQEALGDAMQAQVVSPEWSTASYLQAACLFSLGMETDAQETLKDGTNLEAKRNKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54030			Protein kinase protein with te...		Potri.006G093900 [exp]	0	1
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	1.00	0.9603
AT2G40820			unknown protein		Potri.006G035300 [exp]	1.73	0.9127
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	2.00	0.9237
AT5G22400			Rho GTPase activating protein ...		Potri.009G162900 [exp]	4.12	0.8895
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	6.63	0.9094
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.001G467600 [exp]	6.92	0.8983
AT5G10150			Domain of unknown function (DU...		Potri.005G078300 [exp]	7.34	0.8894
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	7.93	0.9033	Pt-CALS1.3
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	8.66	0.9089
AT2G25270			unknown protein		Potri.006G258700 [exp]	9.48	0.8980

Compare expression of checked genes

Potri.006G093900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.