Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 158 / 2e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 150 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 120 / 1e-33 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 78 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 66 / 2e-12 RING/U-box superfamily protein (.1.2.3.4) AT2G45530 61 / 3e-11 RING/U-box superfamily protein (.1) AT3G06330 59 / 5e-10 RING/U-box superfamily protein (.1.2.3) AT5G03180 58 / 1e-09 RING/U-box superfamily protein (.1.2) AT3G09760 57 / 2e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105900 [exp] 361 / 5e-128 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 210 / 4e-69 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 208 / 4e-68 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 158 / 7e-49 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 149 / 2e-45 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 96 / 7e-23 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 89 / 1e-20 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G024000 [exp] 66 / 2e-12 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 65 / 5e-12 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017197 [exp] 220 / 3e-72 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 186 / 4e-59 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 186 / 1e-58 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 183 / 1e-58 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 173 / 4e-54 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 172 / 9e-54 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 142 / 2e-42 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 141 / 4e-42 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 109 / 7e-29 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 107 / 3e-28 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.006G094000.1 pacid=42767617 polypeptide=Potri.006G094000.1.p locus=Potri.006G094000 ID=Potri.006G094000.1.v4.1 annot-version=v4.1 ATGTCAGTTCATGAAATGTCCCACCTGGATTTAGAGCAAGGGACACACCACTGCTCCGTTGCTGGAAGTGATATCAGTTCTTTTTCTGATGCAGAAAATG GGTCTTGCTACTCTCAGTTCTATTCAACCACTGCTGGGTCTTATGATGATTACAGTTTCGCTTGTGTCTCTGAACCTGAGGGCATAGACGGTGTGGTTTT GGATTCTAGGAGGGTGTCTTCAGTGTCTGATTGTTCAGTGGAGGTGGAGATTGAGAATAGGGTACCTGAAATAAAGGTGCATTTGAGTAAAGTGGAGAGA GATTGTAGGATTTGCCATCTGGGTTTGGAGAGTAATAGTCATGAATCAGGCGTTCCTATTGAATTGGGTTGCTCTTGTAAGAATGATTTAGCTGCTGCTC ATAAACAGTGTGCAGAAGCTTGGTTCAGGATTAGGGGAAACAAGACCTGTGAGATTTGTCATTCGACTGCACGCAATGTTGTTTTAGCAAGTGACATAGA ATCAATCGAGCATTTGAATGAGACAAACAATGGCATGGATACCGCTACGACAGCAGTCTCAGCATCAATTCCCACTGCAGAAACTCGAAGCTTTTGGCAA GGCCACCGCTTCCTGAATTTCTTGCTTGCTTGTGTGGTATTTGCTTTTGTACTGTCGTGGCTCTTTCACTTCAATGTGCCATCCTCGTAA
AA sequence Show only first row Show all	>Potri.006G094000.1 pacid=42767617 polypeptide=Potri.006G094000.1.p locus=Potri.006G094000 ID=Potri.006G094000.1.v4.1 annot-version=v4.1 MSVHEMSHLDLEQGTHHCSVAGSDISSFSDAENGSCYSQFYSTTAGSYDDYSFACVSEPEGIDGVVLDSRRVSSVSDCSVEVEIENRVPEIKVHLSKVER DCRICHLGLESNSHESGVPIELGCSCKNDLAAAHKQCAEAWFRIRGNKTCEICHSTARNVVLASDIESIEHLNETNNGMDTATTAVSASIPTAETRSFWQ GHRFLNFLLACVVFAFVLSWLFHFNVPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.006G094000 [exp]	0	1
AT2G30480			unknown protein		Potri.013G157800 [exp]	1.00	0.8910
AT4G27190			NB-ARC domain-containing disea...		Potri.001G419800 [exp]	8.83	0.8860
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	12.96	0.8664
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	13.19	0.8752
					Potri.001G432540 [exp]	18.97	0.8589
AT5G01750			Protein of unknown function (D...		Potri.016G130800 [exp]	23.83	0.8637
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	25.88	0.8678
AT1G27170			transmembrane receptors;ATP bi...		Potri.011G012801 [exp]	31.89	0.8620
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429890 [exp]	35.21	0.8502
AT4G27220			NB-ARC domain-containing disea...		Potri.001G446332 [exp]	36.41	0.8588

Compare expression of checked genes

Potri.006G094000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.