Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54040 198 / 3e-65 PAR1 protein (.1) AT5G52390 167 / 6e-53 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106800 [exp] 305 / 9e-108 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.015G144800 [exp] 176 / 2e-56 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.012G141800 [exp] 174 / 7e-56 AT5G52390 213 / 6e-71 PAR1 protein (.1) Potri.009G040000 [exp] 173 / 4e-55 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.009G039950 [exp] 171 / 8e-55 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.009G039900 [exp] 150 / 9e-47 AT3G54040 118 / 4e-34 PAR1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021114 [exp] 231 / 4e-78 AT3G54040 192 / 6e-63 PAR1 protein (.1) Lus10017196 [exp] 229 / 1e-77 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10012788 [exp] 164 / 7e-51 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10040714 [exp] 161 / 2e-50 AT5G52390 136 / 2e-40 PAR1 protein (.1) Lus10040702 [exp] 159 / 7e-50 AT5G52390 138 / 2e-41 PAR1 protein (.1) Lus10033988 [exp] 161 / 2e-49 AT5G52390 194 / 3e-62 PAR1 protein (.1) Lus10040715 [exp] 156 / 2e-48 AT5G52390 138 / 4e-41 PAR1 protein (.1) Lus10016450 [exp] 160 / 5e-48 AT5G52390 137 / 6e-39 PAR1 protein (.1) Lus10018204 [exp] 94 / 5e-25 AT5G52390 85 / 2e-21 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [poplar] [flax] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Potri.006G094300.1 pacid=42769217 polypeptide=Potri.006G094300.1.p locus=Potri.006G094300 ID=Potri.006G094300.1.v4.1 annot-version=v4.1 ATGGCTTCCTTCAAACTCCCATTGGTTCTCTTTCTCTCTTCTCTATTCCTCCAAGCAGCTTTAGCCGAAATTGTATGCGAGGAATTGCCAAATGATATTT GTGCTTTTACCGTCTCATCGTCCGGCAAGAGGTGCTTGTTGGAGACATATGCAAAACAAAATGGTGCCGTTGAGTACCAGTGCAGGACATCCGAGGTGGT TGTTGAGAAAATGGCAGATTACATTGAGACCGATGCTTGTGTCAAGGCTTGTGGGGTTGATAGGAACTCGGTTGGCATTTCCTCTGATGCACTCCTTGAG CCTCAGTTCACCGGCAAGCTTTGCTCGCCTGCCTGTTACCAGAACTGCCCCAACATTGTAGACCTTTATTTCAATTTGGCTGCTGGAGAAGGTGCATTTT TGCCTGACCTCTGTGATGCTGCCCGCTATAACCCTCACCGTTCCATGATTCAGCTTATGAGCTCCGGCGCAGCCCCTGGACCTGTTGCTTCTGAAACCGC ATCTTTGATCGCTGCCCCTGCCCCTGCTCCCATGTAA
AA sequence Show only first row Show all	>Potri.006G094300.1 pacid=42769217 polypeptide=Potri.006G094300.1.p locus=Potri.006G094300 ID=Potri.006G094300.1.v4.1 annot-version=v4.1 MASFKLPLVLFLSSLFLQAALAEIVCEELPNDICAFTVSSSGKRCLLETYAKQNGAVEYQCRTSEVVVEKMADYIETDACVKACGVDRNSVGISSDALLE PQFTGKLCSPACYQNCPNIVDLYFNLAAGEGAFLPDLCDAARYNPHRSMIQLMSSGAAPGPVASETASLIAAPAPAPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54040			PAR1 protein (.1)		Potri.006G094300 [exp]	0	1
					Potri.006G056101 [exp]	9.11	0.8758
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	9.94	0.8752
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.008G068700 [exp]	10.00	0.8059
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	11.22	0.8756
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.004G039100 [exp]	11.22	0.8686
AT4G15620			Uncharacterised protein family...		Potri.001G323700 [exp]	15.81	0.8573
AT5G20885			RING/U-box superfamily protein...		Potri.006G217000 [exp]	19.20	0.8610
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	21.07	0.8704	TUB17,TUB6.1
AT5G55150			Protein of unknown function (D...		Potri.003G127700 [exp]	22.31	0.7619
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	25.88	0.8699

Compare expression of checked genes

Potri.006G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.