Plant FIBer expression Database

Potri.006G094600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37960 322 / 6e-105 unknown protein
AT3G54060 251 / 6e-78 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G109100
[exp]
759 / 0 AT2G37960 305 / 2e-98 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021116
[exp]
327 / 2e-106 AT2G37960 267 / 5e-84 unknown protein
Lus10035544
[exp]
142 / 3e-38 AT2G37960 151 / 6e-42 unknown protein
Lus10027749
[exp]
133 / 3e-34 AT2G37960 234 / 2e-72 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G094600.1 pacid=42770241 polypeptide=Potri.006G094600.1.p locus=Potri.006G094600 ID=Potri.006G094600.1.v4.1 annot-version=v4.1
ATGGGGAAGCAAAACAAATCCAAGTCGAAAAAAAGCGATTCTCTTGTTGGAAAGGGGAAAGTAACTCCGCTCCAAATCGCATTCATCGTCGATCGATATC
TCTCCGACAACAATTTATCCCAAACTCGCTCCATTTTCAGGACGGAAGCCTCTTCTCTCATCTCAAAATCTCCTGTTCGTGAGGCACCGAAGACTTTGTT
GAGTTTGGGGGCGATTTTGAATGATTATATATCTTTGAAGGAGCAAAAGGTGATTTTAGATCAAGAAAGGGTGCGTTTGGAGCAAGAGAAATTCAGGGTA
CAGAATCTTTTGCACGGTATGCAACAAGTGATGAATGCTTATAATGCTAGTGGAAACGTAGCACCAGCAGCAGCAGCAGCTACACCTATGATTCAGGCTT
CTGTTACAAGATCTACGGTTATGGGTCCTCGAGCAGATCCATTTCGTGGATCCCCTTCAGCTGCAGGTTGTCCAGTGTACAAATCACCAAATTGCTTTCC
AGTCTCCACACCCTCGAACACTACCACGGAGCATATCAATCTGTCTTCAATTACCAATCAGCCATCAACAAGAAAGCGAATGGGTTCAAGTGCTGTTTCA
GACTCTGCTCCAGATGCTAAAAAGTCTCGCAACAAGTTAGCCTCAAGGAAAATACCAAGTAAATGTACACTCAAACAATCTGATAATGATTCCACTACTC
AAGAAAATTTTCAGCCCTCTCCAATGATTGGATCATCAACACAAAATTGCACACCCACTGGTCCAATAGTTCTAGCATCCAATGTGGCTAAGAGTTTGTT
CCATCAGCCTTTACCGTCCCCTCCAACTAGTTCATCTAATCCCAATACACCACCACAATCATTTTCTCCTCACAATGACAACTCTGCATCTCCAAAGGAT
ATTTCTGCCAATGCTCACTGCAGTAGCAACAATACTCCTCAACAGGTCACTCCTACCAACTGTACAGTGATCACATCAGAGAGAGTTACAGTGAGCCCAT
TCAAAAACATGACGTATTACACCATGGAGAGAAATCAGTGCATCTCTTCTTCCTCACCAGTCAAGACAACCTTGAAGAGGATGTGCAAGAGGGATTGTGT
GAAAGGAAGGCTAGACTTCGATGGTTCTGACGCAACAGTGAATTTGGATAAACCAGTTGACAATGAGTTCTCTACATCCGAGTCTGATAAGGATGGAGAC
TTTTTTGACTTAGACTTGCCTAACTTAGATGTATTCGGGGCTAATTTCTCCTTCTCTGAACTGTTGGTGGATCTAGACCTTGATTGTGAAGGAATTGCTT
GTCCATGCCAGCCAGCCTTGGGAGCTTCTACAGACACCATTTCAGGGTCATCACATGAATCTAGGGATGGTAATCTGGGGACTGATCAAGTCATGTCGGA
GTTTTCCTCTACCATGACTGAGGTGTTTTCAGGAAACGATATACACATGCAAGGTCCTGATATAACAGCTGTGAAGTCTATAACAAAATGCATAAGAATT
TTAAGCCCTGCTAAAAGTCAGAGGAGTTCTTTGAATCAGGAGAATTGTTTGGCTAGTAACTGA
AA sequence
>Potri.006G094600.1 pacid=42770241 polypeptide=Potri.006G094600.1.p locus=Potri.006G094600 ID=Potri.006G094600.1.v4.1 annot-version=v4.1
MGKQNKSKSKKSDSLVGKGKVTPLQIAFIVDRYLSDNNLSQTRSIFRTEASSLISKSPVREAPKTLLSLGAILNDYISLKEQKVILDQERVRLEQEKFRV
QNLLHGMQQVMNAYNASGNVAPAAAAATPMIQASVTRSTVMGPRADPFRGSPSAAGCPVYKSPNCFPVSTPSNTTTEHINLSSITNQPSTRKRMGSSAVS
DSAPDAKKSRNKLASRKIPSKCTLKQSDNDSTTQENFQPSPMIGSSTQNCTPTGPIVLASNVAKSLFHQPLPSPPTSSSNPNTPPQSFSPHNDNSASPKD
ISANAHCSSNNTPQQVTPTNCTVITSERVTVSPFKNMTYYTMERNQCISSSSPVKTTLKRMCKRDCVKGRLDFDGSDATVNLDKPVDNEFSTSESDKDGD
FFDLDLPNLDVFGANFSFSELLVDLDLDCEGIACPCQPALGASTDTISGSSHESRDGNLGTDQVMSEFSSTMTEVFSGNDIHMQGPDITAVKSITKCIRI
LSPAKSQRSSLNQENCLASN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37960 unknown protein Potri.006G094600
[exp]
0 1
AT2G16440 MCM4 MINICHROMOSOME MAINTENANCE 4, ... Potri.009G121500
[exp]
2.44 0.9527
AT4G16970 Protein kinase superfamily pro... Potri.001G151900
[exp]
3.46 0.9460
AT2G20980 MCM10 minichromosome maintenance 10 ... Potri.009G134500
[exp]
3.46 0.9448
AT1G44900 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, ... Potri.001G070500
[exp]
4.47 0.9443
AT1G27880 DEAD/DEAH box RNA helicase fam... Potri.010G056500
[exp]
6.00 0.9213
AT5G44635 MCM6 MINICHROMOSOME MAINTENANCE 6, ... Potri.001G074000
[exp]
6.32 0.9359
AT3G27120 P-loop containing nucleoside t... Potri.001G331200
[exp]
7.14 0.9167
AT4G14700 ORC1, ATORC1A, ... origin recognition complex 1 (... Potri.009G054300
[exp]
7.54 0.8805 Pt-ORC1.1
AT3G59550 ATSYN3, SYN3, A... SISTER CHROMATID COHESION 1 PR... Potri.001G225600
[exp]
8.00 0.9296 SYN3.1
AT5G46280 MCM3 MINICHROMOSOME MAINTENANCE 3, ... Potri.004G131600
[exp]
8.12 0.9353

Potri.006G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.