Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 460 / 3e-158 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45560 383 / 2e-128 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G61040 380 / 3e-127 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 377 / 6e-126 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 374 / 2e-124 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 369 / 6e-123 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45580 346 / 7e-114 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT5G07990 333 / 1e-108 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G33730 311 / 2e-102 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G12300 306 / 4e-98 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030100 [exp] 449 / 7e-154 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 449 / 2e-153 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029200 [exp] 445 / 2e-152 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 443 / 1e-151 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 441 / 9e-151 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.001G113900 [exp] 408 / 4e-138 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 408 / 5e-138 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 401 / 2e-135 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 392 / 4e-132 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021136 [exp] 699 / 0 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10025749 [exp] 687 / 0 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10002839 [exp] 624 / 0 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021137 [exp] 617 / 0 AT3G52970 387 / 6e-130 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021135 [exp] 465 / 4e-160 AT3G52970 634 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10029930 [exp] 430 / 1e-146 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10008936 [exp] 406 / 3e-137 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 381 / 2e-127 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 374 / 1e-124 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 372 / 7e-124 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G094700.1 pacid=42767051 polypeptide=Potri.006G094700.1.p locus=Potri.006G094700 ID=Potri.006G094700.1.v4.1 annot-version=v4.1 ATGGAGTGGTTGTGGCCTTCAAACCTTTCCATTTCCCTCAGCCTTTTCTCACTAGCACTCCTATCCCTGCTCCTCCTCCGTGCAAAGTCCAGCCAAAAAA GACACCCTCCGGGGCCATCAGGATGGCCAATATTTGGGAACCTGTTCGATCTTGGTTCAATGCCACACCGGACTCTAACTGACATGAGACAGAAGTATGG TAATGTTATTTGGTTAAGACTCGGTGCTATGAACACCATGGTGATTCTATCAGCTAAGGCTGCTACCGAGTTCTTCAAGAACCATGACCTATCATTTGCT GATCGCACCATAACGGAAACAATGCGTGCCCACGGCTACGATCAAGGCTCCCTGGCCCTTGCACCTTATGGTTCGTATTGGCGCGTCCTCAGGCGGCTGG TCACTGTAGACATGATAGTAACCAAACGCATCAATGAAACAGCTTCTATACGTAGAAAATGTGTTGATGATATGCTGCAATGGATTGAAGAGGAGTCATG TAAAGTTGGGAAGGCTGCCGGAATTCATGTTTCACGGTTTGTGTTCTTGATGACATTTAATATGTTAGGAAATCTTATGCTTTCACGTGATTTATTAGAT CCAGAATCAAAGGTGGGATCTGAATTTTTTGATGCAATGATGGGGCTAATGGAGTGGTCAGGGCATGCTAACCTGGCGGATTTTTTTCCATGGTTGAGGC GGCTAGACCTACAAGGATTGAGGAAGAACATGGAGAGGGATCTTGGGAAGGCCATGGAGATTGCTTCGAAGTTTGTGAAGGAGAGGGTGGAGGATAAGAT AGTGACAAGTGATTCGAGGAAGGATTTCTTAGATGTTCTGCTTGAGTTCAGAGGCAGTGGAAAAGATGAGCCTGATAAACTTTCAGAACGGGACGTCAAC ATTTTTATACTGGAAATATTTCTGGCCGGTTCAGAAACCACCAGCAGTACTGTTGAGTGGGCACTGACCGAGCTCCTATGCAACCCAGAGTCGATGATCA AGGTTAAAGCTGAGCTTGCTCAAGTAGTTCGAGCAAGCAAGAAAGTTGAAGAGAGTGACATGGAAAATCTTCCATTCTTGCAAGCTGTGGTGAAGGAAAC TCTGCGACTACACCCTCCAATTCCCTTTCTAGTTCCAAGAAGAGCAATGCAAGACACCAATTTCATGGGATATGATATACCCAAGAACACACAAGTTCTA GTTAATGCCTGGGCTATTGGAAGAGACCCAGATGCATGGGATGATCCTTCGTGTTTCATGCCTGAAAGGTTCATCGGAAAAAGAGTTGACTATAGAGGTC AAGATTTGGAGTTCATTCCTTTTGGAGCCGGGAGACGAATGTGTGCAGGTGTGCCACTAGCTCATCGAGTTCTTCACCTTATTTTGGGGTCCTTGCTTCA CCATTTTGACTGGGAATTTGAAGCTAATGTCAACCCAGCCAGTGTAGATAAGAAAGATAGAATGGGTATTACAGTGCGTAAATCTGAACCATTAATGGCG GTACCTAAGAGGTTTAATAAGGCGTGA
AA sequence Show only first row Show all	>Potri.006G094700.1 pacid=42767051 polypeptide=Potri.006G094700.1.p locus=Potri.006G094700 ID=Potri.006G094700.1.v4.1 annot-version=v4.1 MEWLWPSNLSISLSLFSLALLSLLLLRAKSSQKRHPPGPSGWPIFGNLFDLGSMPHRTLTDMRQKYGNVIWLRLGAMNTMVILSAKAATEFFKNHDLSFA DRTITETMRAHGYDQGSLALAPYGSYWRVLRRLVTVDMIVTKRINETASIRRKCVDDMLQWIEEESCKVGKAAGIHVSRFVFLMTFNMLGNLMLSRDLLD PESKVGSEFFDAMMGLMEWSGHANLADFFPWLRRLDLQGLRKNMERDLGKAMEIASKFVKERVEDKIVTSDSRKDFLDVLLEFRGSGKDEPDKLSERDVN IFILEIFLAGSETTSSTVEWALTELLCNPESMIKVKAELAQVVRASKKVEESDMENLPFLQAVVKETLRLHPPIPFLVPRRAMQDTNFMGYDIPKNTQVL VNAWAIGRDPDAWDDPSCFMPERFIGKRVDYRGQDLEFIPFGAGRRMCAGVPLAHRVLHLILGSLLHHFDWEFEANVNPASVDKKDRMGITVRKSEPLMA VPKRFNKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.006G094700 [exp]	0	1
AT3G11590			unknown protein		Potri.004G199500 [exp]	5.19	0.8060
					Potri.016G124300 [exp]	7.48	0.7928
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	8.30	0.7857	SQS1.2
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	10.48	0.8387
					Potri.003G088100 [exp]	10.58	0.7783
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	10.58	0.8185
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Potri.001G361600 [exp]	11.66	0.8347	Pt-WRK.2
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.005G249300 [exp]	18.38	0.6914
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006100 [exp]	19.07	0.8253
					Potri.007G088800 [exp]	19.51	0.8282

Compare expression of checked genes

Potri.006G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.