Plant FIBer expression Database

Potri.006G094800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09210 357 / 6e-123 PTAC13 plastid transcriptionally active 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035543
[exp]
292 / 1e-97 AT3G09210 292 / 5e-98 plastid transcriptionally active 13 (.1)
Lus10027750
[exp]
288 / 4e-96 AT3G09210 290 / 4e-97 plastid transcriptionally active 13 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0107 KOW PF00467 KOW KOW motif
CL0439 NusG-like PF02357 NusG Transcription termination factor nusG
Representative CDS sequence
>Potri.006G094800.1 pacid=42768519 polypeptide=Potri.006G094800.1.p locus=Potri.006G094800 ID=Potri.006G094800.1.v4.1 annot-version=v4.1
ATGAAGCAAGGGCTTCTCCTATGGAGTCCTTGCCCTCACTCTCTCCTCTCTCCACCCTCATTTCCCTTCCTTTCCCTCTCAATCCCAAGAACCAAACACA
CCCTTTCACCAATAGCAGCAACTCTTGATTCCACAACCACCCGTGAAGAACAGCAACTGCTAACAGCAAGAGAGAGAAGGCAACTCAGAAATGAGAAGAG
AGAAAGTAAGGCTGGATATAATTGGCGAGAAGAAGTTGAAGAGAGGTTTATTAAGAAACCCAAGAAGAAACCTACTACTTCTATGGCTGAAGAGCTCAAT
CTTGATAAGCTCGCTCTTTTAGGTCCTCAATGGTGGATTGTTCGGGTTTCTCGAATTAGAGGAGATGAAACTTCTGATGTTCTTGCTCGGTTACTCGCTA
GGAACTTCCCTCAAATGGACTTTAAGGTCTATGCTCCTTCTGTCAAGGAGAGGAGAAAATTGAAAAATGGTACTTACTCTGTTAAACCAAAACCCATCTT
TCCAGGTTGTGTTTTTCTATGGTGTGTTCTAAACAAAGAGATACATGATTTTGTAAGAGAGTGCGACGGAGTTGGTGGTTTTGTTGGTGCCAAGGTTGGA
AATACAAAACGACAGATCAACAAGCCTAGACCAGTGTCTGATGATGACATGGAAGCAGTCTTCCAACAGGCAAAAGAGGAACAAGAAAAAGCTGATATAG
GTTTTGAGGAAGAGCAGCAAGCACAGGGAGCCCTTAACTCTGTGAAGTTAGGTTCCAATAACATTACACAATCTTTTATAGATTCCAATTCCGAAAGGGG
ATTGAGAAAAATCTCTGGCCCTCTTGTGAGTAGCTCATCCAGAAAAAAGGGTGACCTCCCAAAAACAGGTTCAACTGTTAGGGTTGTATCTGGAACTTTT
GCAGACTTTGTTGGCAGCCTTAAGAAACTAAATCGCAAAACTGGGAAGGCAACTGTGGTGGTTACTCTCTTCGGCAAGGAGAGCTTAGTAGAATTAGATC
TCAGTGAAATTGTAGCAGAGATGAAATGA
AA sequence
>Potri.006G094800.1 pacid=42768519 polypeptide=Potri.006G094800.1.p locus=Potri.006G094800 ID=Potri.006G094800.1.v4.1 annot-version=v4.1
MKQGLLLWSPCPHSLLSPPSFPFLSLSIPRTKHTLSPIAATLDSTTTREEQQLLTARERRQLRNEKRESKAGYNWREEVEERFIKKPKKKPTTSMAEELN
LDKLALLGPQWWIVRVSRIRGDETSDVLARLLARNFPQMDFKVYAPSVKERRKLKNGTYSVKPKPIFPGCVFLWCVLNKEIHDFVRECDGVGGFVGAKVG
NTKRQINKPRPVSDDDMEAVFQQAKEEQEKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSSRKKGDLPKTGSTVRVVSGTF
ADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEIVAEMK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09210 PTAC13 plastid transcriptionally acti... Potri.006G094800
[exp]
0 1
AT3G26900 ATSKL1 Arabidopsis thaliana shikimate... Potri.017G062800
[exp]
1.00 0.9913 SK1
AT5G13410 FKBP-like peptidyl-prolyl cis-... Potri.001G068300
[exp]
1.41 0.9897
AT1G03630 PORC ,POR C protochlorophyllide oxidoreduc... Potri.013G135500
[exp]
2.23 0.9862 Pt-POR.2
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G058400
[exp]
2.44 0.9884 PtrTrxm3
AT2G22780 PMDH1 peroxisomal NAD-malate dehydro... Potri.001G287400
[exp]
3.16 0.9843 MDHG.2
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.018G071800
[exp]
3.46 0.9858
AT4G29060 EMB2726 embryo defective 2726, elongat... Potri.018G083900
[exp]
5.19 0.9844
AT4G19100 PAM68 photosynthesis affected mutant... Potri.001G132001
[exp]
6.32 0.9853
AT5G09995 unknown protein Potri.010G003700
[exp]
7.14 0.9785
AT5G52440 HCF106 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.012G144300
[exp]
7.21 0.9759 Pt-HCF106.2

Potri.006G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.