Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01090 259 / 4e-84 Concanavalin A-like lectin family protein (.1) AT3G09190 231 / 3e-73 Concanavalin A-like lectin family protein (.1) AT3G09035 198 / 1e-60 Concanavalin A-like lectin family protein (.1) AT3G54080 125 / 1e-32 Concanavalin A-like lectin family protein (.1) AT5G03140 119 / 3e-29 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 111 / 9e-27 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 108 / 8e-26 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 108 / 1e-25 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 107 / 2e-25 Concanavalin A-like lectin protein kinase family protein (.1) AT5G42120 107 / 2e-25 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G107200 [exp] 554 / 0 AT5G01090 230 / 9e-73 Concanavalin A-like lectin family protein (.1) Potri.010G194700 [exp] 234 / 1e-74 AT5G01090 117 / 5e-30 Concanavalin A-like lectin family protein (.1) Potri.001G368300 [exp] 123 / 1e-30 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 118 / 4e-29 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 115 / 4e-28 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 108 / 1e-25 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 106 / 6e-25 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 105 / 1e-24 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 104 / 3e-24 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021117 [exp] 379 / 6e-131 AT5G01090 210 / 5e-65 Concanavalin A-like lectin family protein (.1) Lus10017194 [exp] 372 / 6e-128 AT5G01090 219 / 3e-68 Concanavalin A-like lectin family protein (.1) Lus10027751 [exp] 257 / 3e-83 AT5G01090 166 / 6e-48 Concanavalin A-like lectin family protein (.1) Lus10035542 [exp] 255 / 1e-82 AT5G01090 175 / 1e-51 Concanavalin A-like lectin family protein (.1) Lus10016507 [exp] 113 / 2e-27 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 110 / 4e-26 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 110 / 4e-26 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 109 / 6e-26 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 107 / 4e-25 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 105 / 1e-24 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G094900.4 pacid=42768938 polypeptide=Potri.006G094900.4.p locus=Potri.006G094900 ID=Potri.006G094900.4.v4.1 annot-version=v4.1 ATGGCCAAGCTCTCCATTTCTACCTGCTTAACAGTGTTAACTTTCATGATTTTCCACTTGAAAATGCTACATGCTGTCTCAAGTTACTCCTTTTCATTTG GAAGTTTTGATAAAGATCCAAACTTTGAGTCCAGCATTGCTCTTTATGGTGATGCAAAGGTTGTTGGTAATAGTTCTTCTCTTCAACTCACTCGCCCTGT GAGCTTAAGTGCTGGACGAGTCATGTACAAGCAACCCATCAAGCTTGTTGAAGGTAATCCTGGAAATTTGGTTTCCTTTTCCACTTATTTCTCATTCTTG ATGTCACCTGATAATGGAGATGGTTTAGCTTTTGTAGTGGTTCCTAGTGGTTTTAATGCAAGTGTGTTTGATAACACCCCATTTGGGCTTTATTTAGGAC CCGAGAAAAGTAGTCCTAAATTTGTTGCTGTTGAATTTGATACGATGAGGGATGCTAAGTTTGGTGATTTGAATGATAACCATGTGGGAATTGATGTGGG TGGTTTTGTATCAGTTAAAGTGAGAGACGTTTCATCTAATAATATGGTGTTGAATAGTGGAAAAAGATTGCATTCTTGGATTGATTATGAAGCTGGTTCG AAAACATTAGAGGTTAGATTGAGTCATTCTGGTGATATAAAGCCAATTGACCCATTGCTCTCTCACCCAATTGACCTGTCAAAAACGTGGAATGATGAGA AAGTGTTGATAGGCTTGACCTCATCAAATGGTAATTCTTCCCAGACATGTTTCCTCCATTCATGGAACTTTAAGCTAAGGCGAGTCCCGCTTTGGATGCA TTCTCAGCCACTGGACCCTCAGGATTTTGCTAAACATGAGAAACCAATGGTGGTTCAGAAGAAGAGTGGTTGTATTTTAAAAATGCTTACTGCAATGATC TTTGGCACTGCTTGTGGAGCAATGGGGGCGTTCATGGTGTTGTATCTTTGGACCATTTTTGGCAATAGGCGCCCTGTCATGCCAGAAGAGTGTTCTGTCC CCCCAGTGGATTTCGAATACAAGAAAGTCAAAGTTATTGTAGATAAAGCCATCGAAGATGGCAAGCATTAG
AA sequence Show only first row Show all	>Potri.006G094900.4 pacid=42768938 polypeptide=Potri.006G094900.4.p locus=Potri.006G094900 ID=Potri.006G094900.4.v4.1 annot-version=v4.1 MAKLSISTCLTVLTFMIFHLKMLHAVSSYSFSFGSFDKDPNFESSIALYGDAKVVGNSSSLQLTRPVSLSAGRVMYKQPIKLVEGNPGNLVSFSTYFSFL MSPDNGDGLAFVVVPSGFNASVFDNTPFGLYLGPEKSSPKFVAVEFDTMRDAKFGDLNDNHVGIDVGGFVSVKVRDVSSNNMVLNSGKRLHSWIDYEAGS KTLEVRLSHSGDIKPIDPLLSHPIDLSKTWNDEKVLIGLTSSNGNSSQTCFLHSWNFKLRRVPLWMHSQPLDPQDFAKHEKPMVVQKKSGCILKMLTAMI FGTACGAMGAFMVLYLWTIFGNRRPVMPEECSVPPVDFEYKKVKVIVDKAIEDGKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01090			Concanavalin A-like lectin fam...		Potri.006G094900 [exp]	0	1
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.004G173800 [exp]	3.46	0.9005	Pt-ADF5.2
AT1G67910			unknown protein		Potri.010G046700 [exp]	8.36	0.8776
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.009G061500 [exp]	11.66	0.8697
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032900 [exp]	12.72	0.8363
AT5G60460			Preprotein translocase Sec, Se...		Potri.009G012000 [exp]	18.46	0.8348
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.004G133500 [exp]	18.97	0.8539	Pt-CDC2.1,1
AT2G38370			Plant protein of unknown funct...		Potri.016G133300 [exp]	19.51	0.8713
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	21.16	0.8555
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G259200 [exp]	21.35	0.8445
AT4G35920		MCA1	mid1-complementing activity 1,...		Potri.005G110000 [exp]	23.91	0.8507

Compare expression of checked genes

Potri.006G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.