Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TUB5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23860 852 / 0 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62700 848 / 0 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 848 / 0 TUB2 tubulin beta chain 2 (.1) AT2G29550 843 / 0 TUB7 tubulin beta-7 chain (.1) AT1G75780 838 / 0 TUB1 tubulin beta-1 chain (.1) AT5G12250 837 / 0 TUB6 beta-6 tubulin (.1) AT4G20890 832 / 0 TUB9 tubulin beta-9 chain (.1) AT1G20010 827 / 0 TUB5 tubulin beta-5 chain (.1) AT5G44340 825 / 0 TUB4 tubulin beta chain 4 (.1) AT5G19780 373 / 4e-126 TUA5 tubulin alpha-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G107300 [exp] 855 / 0 AT5G23860 843 / 0.0 tubulin beta 8 (.1.2) Potri.001G106100 [exp] 854 / 0 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 852 / 0 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.003G125400 [exp] 851 / 0 AT5G23860 857 / 0.0 tubulin beta 8 (.1.2) Potri.001G246900 [exp] 848 / 0 AT5G62700 858 / 0.0 tubulin beta chain 3 (.1) Potri.001G464400 [exp] 846 / 0 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.011G162500 [exp] 843 / 0 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.001G272700 [exp] 842 / 0 AT5G62700 849 / 0.0 tubulin beta chain 3 (.1) Potri.001G272800 [exp] 840 / 0 AT5G62700 857 / 0.0 tubulin beta chain 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039231 [exp] 854 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10027476 [exp] 854 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 852 / 0 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 852 / 0 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10023348 [exp] 846 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10038458 [exp] 846 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10026813 [exp] 838 / 0 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10036069 [exp] 838 / 0 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10021094 [exp] 835 / 0 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10017217 [exp] 832 / 0 AT1G75780 854 / 0.0 tubulin beta-1 chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G095000.2 pacid=42767364 polypeptide=Potri.006G095000.2.p locus=Potri.006G095000 ID=Potri.006G095000.2.v4.1 annot-version=v4.1 ATGCGTGAGATTCTTCACATCCAAGGAGGCCAATGCGGCAATCAAATTGGTGCAAAATTCTGGGAGGTGGTTTGTGCAGAACACGGAATTGATGCAACTG GGAAATGGAATGGAGATTCTGAGCTGCAGATTGAAAGGATCAATGTTTATTACAACGAGGCAGGTAATGGCCGGTATGTTCCAAGGGCTGTCCTTATGGA CCTTGAACCTGGTACTATGGATAGTGTCAGGTCCGGTCCTTATGGCCAGATCTTCAGACCTGATAATTTTGTTTTCGGACAATCTGGTGCCGGAAACAAC TGGGCTAAAGGCCATTACACCGAGGGTGCCGAGTTGATTGATTCTGTCCTCGATGTTGTCCGAAAAGAAGCAGAGAATTGTGATTGCTTGCAGGGATTTC AGGTGTGCCATTCTTTAGGAGGAGGGACTGGATCCGGTATGGGAACTCTTTTGATATCGAAGATCAGAGAGGAATATCCAGACCGGATGATGCTTACCTT CTCCGTCTTTCCCTCTCCCAAGGTTTCTGATACGGTTGTTGAGCCTTATAATGCAACCCTTTCTGTGCATCAGCTTGTTGAAAATGCAGATGAATGTATG GTCCTTGATAATGAAGCTCTCTATGACATCTGCTTCCGTACCCTCAAACTCACTACTCCAAGCTTTGGTGATTTGAATCATTTGATTTCTGCTACAATGT CTGGGGTCACATGTTGCCTGAGATTTCCAGGACAGCTTAACTCTGACCTGAGAAAGCTTGCTGTGAATCTGATCCCCTTCCCTCGGCTCCATTTCTTCAT GGTGGGCTTTGCTCCTCTGACCTCACGTGGTTCGCAGCAGTACAGTGCCTTGACTGTCCCAGAGCTCACCCAGCAAATGTGGGATGCAAAGAACATGATG TGTGCAGCAGACCCGCGCCACGGTCGGTATCTGACAGCCTCAGCAATGTTCAGGGGCAAAATGAGTACCAAGGAAGTTGATGAGCAGATGATCAATGTTC AAAACAAGAACTCTTCATACTTTGTTGAATGGATCCCAAACAATGTCAAATCAACTGTTTGTGATATTCCTCCTACAGGACTGAAAATGGCATCGACATT CATTGGAAACTCGACATCAATTCAGGAAATGTTCCGTCGTGTGAGCGAGCAGTTTACTGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGG GAAGGAATGGATGAGATGGAGTTCACAGAGGCAGAGAGCAACATGAATGATTTGGTTTCTGAGTATCAGCAGTACCAAGATGCCACAGCCGATGAGGACT ATGAGGATGAAGAGGAGGAACTCCATGACATGTGA
AA sequence Show only first row Show all	>Potri.006G095000.2 pacid=42767364 polypeptide=Potri.006G095000.2.p locus=Potri.006G095000 ID=Potri.006G095000.2.v4.1 annot-version=v4.1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGKWNGDSELQIERINVYYNEAGNGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNN WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALTVPELTQQMWDAKNMM CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEDYEDEEEELHDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.006G095000 [exp]	0	1	TUB5
AT4G27720			Major facilitator superfamily ...		Potri.015G008100 [exp]	5.09	0.9035
AT3G49720			unknown protein		Potri.001G288200 [exp]	12.16	0.8826
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.008G090000 [exp]	21.21	0.8792
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.019G128900 [exp]	22.36	0.8779
AT3G52930			Aldolase superfamily protein (...		Potri.018G090100 [exp]	30.74	0.8732
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	31.46	0.8718
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Potri.010G175000 [exp]	34.87	0.8532
AT5G42330			unknown protein		Potri.005G250800 [exp]	39.98	0.8253
AT4G39860			unknown protein		Potri.007G092400 [exp]	45.46	0.8427
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	56.08	0.8640

Compare expression of checked genes

Potri.006G095000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.