Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 723 / 0 O-fucosyltransferase family protein (.1) AT3G54100 715 / 0 O-fucosyltransferase family protein (.1) AT5G01100 621 / 0 O-fucosyltransferase family protein (.1) AT5G35570 575 / 0 O-fucosyltransferase family protein (.1) AT1G22460 405 / 2e-134 O-fucosyltransferase family protein (.1) AT5G64600 400 / 5e-133 O-fucosyltransferase family protein (.1) AT1G14020 397 / 4e-132 O-fucosyltransferase family protein (.1) AT5G15740 395 / 3e-131 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 394 / 7e-131 O-fucosyltransferase family protein (.1) AT2G03280 392 / 1e-130 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 1038 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 585 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 429 / 2e-144 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 421 / 5e-141 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 410 / 7e-137 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 403 / 2e-134 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 400 / 3e-133 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 399 / 6e-133 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 392 / 5e-130 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017190 [exp] 759 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 756 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 753 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 736 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 576 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 573 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 563 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 555 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 409 / 2e-136 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 395 / 3e-131 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G095300.1 pacid=42769400 polypeptide=Potri.006G095300.1.p locus=Potri.006G095300 ID=Potri.006G095300.1.v4.1 annot-version=v4.1 ATGTCGTCTGGAGGTCCCACCGCTACGTCCTCCACCAATGCCAGCCCAAGGAGCCACCCTGGTCCCACCACCACCAGACGACGGGTTGATGCCATCGCCG CAGACAGAACCTCTAACTTCTCCGATTTCAATCACGATTTCTCTGACGAAGAAGACAGTCTTAGCGGCTCTTCCACTACTGGCGGGCCCCACCACTTTCA TCATAATTACCATTGTCATAACCATAGCCACCGCCACCACCCCTTGATAAAGTATCTTCTGCTTCGCAGGAAGTTTTTCTTTTTTGTTCCGGAGTCGTGG CTGCTTGGGGTGGAGGATTTGACGGCTACCATTTCACGTGGTTTGAGATCCGGCAAGAACATGGGTCGTAGGATTTTTGGTGTTTTAATGGTAATGGCGG TTTTGTCGGTTTTTCTGAAGGTCTCGTTTTGGAGTCAAACGGAGAGAAATATTCATGAAAATAGTAATTTAGTTATTTTCAGACATTTTAAAGATGATTG GGCTAGGGCTCAACGTTCTATCATCGAACACCACCCTTCCATTTCCACTCCCCTTCTCCACAAGCTTCCTCCTATTCCAAAAATCTGGATGAAACCCAAT AGCGACGACTTTTATCAGTGCATACCTCCGCCAAGAAATCAAATAAGAGCCAGGAAAACAAATGGTTACCTTCTTGTTCATGCGAATGGTGGATTGAATC AAATGAGAACTGGAATTTGTGATATGGTTGCAGCTGCTATGTTAATGAATGCAACTCTTGTTCTTCCTGCTCTTGATCGTGAATCATTTTGGACAGATCC AAGCACTTTTAAAGACATTTTTGACTGGAGGCACTTTATGGAAGCGTTAAAAGATGATATTGATGTAGTTGAGTATTTGCCATCCCAGTATGCAGCCAAG AAGCCCCATGAAAAGGCACCTGTCTCGTGGTCTAAGGCCAATTACTACAGAGTGGAGATGGCTACATTGTTAAAGAAGTACAAAGTTTTAAGGTTTACCC ACAGTGATTCACGGCTGGCTAATAATGGCCTTGCAGCTCACATCCAGAGGCTAAGGTGCCGTGCCAATTACAAGGCTCTCCGGTATGCAAAGGAGATTGA GGATCTTGGAAAGAAATTGGTTGATAGACTAAGAAATAAAAGCGAGCCATATGTTGCTCTGCATTTAAGATATGAGAAAGACATGCTTGCCTTCACTGGC TGCAGCCACAACCTTACCGCAGAAGAGGCTGAAGAGCTCAGAGTTATGAGGTACAAGACTTCGCATTGGAAGGAGAAGGAGATAGATAGTAAAACACGAC GGCTCCAAGGGGGTTGTCCGATGACTCCCAGAGAAGCAGCTATATTTCTAAAGGCTATGGGCTACCCATCCTCTACAGCTATCTATATAGTTGCAGGGCC ATCATACGGAAGCGGTAGCATGGCACCCTTCCTTGCAGAGTTCCCAAATGTTTTTTCTCATTTTAATCTAGCAACATCGGAAGAATTAGAACCTATCAAG CCATATCAAAATCGTCTCGCTGCCTTGGATTATATTGTGGCACTTGAAAGTGACGTCTTTATTTATACATATCATGGAAATATGGCCAAAGCTGTGCAGG GGCATAGGAGGTTTGAAGGATTTCGAAAGACTATAAATCCAGACAAACGAAATTTTGTCGTGCTGATTGATCAGTTGGACGACGGTGCATTATCCTGGGA AGAATTCTCTTTGCAGGTTCAGAGTTTACATTCAGACAGGATTGGAGCTCCATACCAGAGGCAGGCAGGCTCATCACCGAAGGAGGAAGAGAACTTTTAT GCAAATCCTCTTCCTGGATGTGTATGCAACATTTCCCAGGAGATATTTGTGAGCCCGAAACTTGTCCAAACAGTAAAACCAAGTAATAGGGCTGCATTGA ATAGATAG
AA sequence Show only first row Show all	>Potri.006G095300.1 pacid=42769400 polypeptide=Potri.006G095300.1.p locus=Potri.006G095300 ID=Potri.006G095300.1.v4.1 annot-version=v4.1 MSSGGPTATSSTNASPRSHPGPTTTRRRVDAIAADRTSNFSDFNHDFSDEEDSLSGSSTTGGPHHFHHNYHCHNHSHRHHPLIKYLLLRRKFFFFVPESW LLGVEDLTATISRGLRSGKNMGRRIFGVLMVMAVLSVFLKVSFWSQTERNIHENSNLVIFRHFKDDWARAQRSIIEHHPSISTPLLHKLPPIPKIWMKPN SDDFYQCIPPPRNQIRARKTNGYLLVHANGGLNQMRTGICDMVAAAMLMNATLVLPALDRESFWTDPSTFKDIFDWRHFMEALKDDIDVVEYLPSQYAAK KPHEKAPVSWSKANYYRVEMATLLKKYKVLRFTHSDSRLANNGLAAHIQRLRCRANYKALRYAKEIEDLGKKLVDRLRNKSEPYVALHLRYEKDMLAFTG CSHNLTAEEAEELRVMRYKTSHWKEKEIDSKTRRLQGGCPMTPREAAIFLKAMGYPSSTAIYIVAGPSYGSGSMAPFLAEFPNVFSHFNLATSEELEPIK PYQNRLAALDYIVALESDVFIYTYHGNMAKAVQGHRRFEGFRKTINPDKRNFVVLIDQLDDGALSWEEFSLQVQSLHSDRIGAPYQRQAGSSPKEEENFY ANPLPGCVCNISQEIFVSPKLVQTVKPSNRAALNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	0	1
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.004G000750 [exp]	1.00	0.9431
AT2G32580			Protein of unknown function (D...		Potri.004G006500 [exp]	2.44	0.9424
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.001G198400 [exp]	5.29	0.8967
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.006G154600 [exp]	5.83	0.9065	AKT1.1
					Potri.006G062150 [exp]	6.63	0.9282
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.014G190000 [exp]	7.41	0.8817
AT3G19090			RNA-binding protein (.1)		Potri.009G106500 [exp]	7.74	0.9074
AT1G15320			unknown protein		Potri.001G202300 [exp]	8.71	0.9026
AT1G67420			Zn-dependent exopeptidases sup...		Potri.008G175400 [exp]	9.59	0.8997
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.007G072750 [exp]	9.79	0.9202

Compare expression of checked genes

Potri.006G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.