Plant FIBer expression Database

Potri.006G095400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38000 531 / 0 chaperone protein dnaJ-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021120
[exp]
614 / 0 AT2G38000 577 / 0.0 chaperone protein dnaJ-related (.1)
Lus10017189
[exp]
610 / 0 AT2G38000 571 / 0.0 chaperone protein dnaJ-related (.1)
PFAM info
Representative CDS sequence
>Potri.006G095400.1 pacid=42768199 polypeptide=Potri.006G095400.1.p locus=Potri.006G095400 ID=Potri.006G095400.1.v4.1 annot-version=v4.1
ATGGAGGAACCTCTGTTTTCAGAAAACAGGAGTGAGTTGGGAGAAAGCGAGAAATGGAGCTCCTATCAGTTCGTGGGAAGAACCGGTTCGGTATTGCCCA
CCGCTTCAGTCAGCGTCGATGAAATCCGGTCAGCTGCTGCCTCTTCCGATTATTACCCGCCCTCCATTCATGCCGCCTTGCTCACCTCGCCTGAACCCAA
TCCCACCGAGCAAGAAGCCATTGTTTATCAGGGAGGATATGTGGGAGGTGACTATGGTGGATCTACCAATGAATTTCAGAGGCAAATATTGGATGAGGTT
GAGATTCGAGAGTTGCTCATTGATCATGTTGGCCATCGTTGCTGTTGGGGAAGTCGTCCTGCTCGGACCTGGAAGATTCATGCCGTGGAAGACTGCAATG
TCTATATAGGATCTCTAGAAACTTTCATAGAGGAGAGGGAAATTATTAGAGAAACAGAGCCATATCACGGTGGGAATATTGTTGGAAAGGACACTGCACC
TGAACTTGGCGTCTGGGAATTGGATCTAAGATCTCAGTTCCCTGTGCTCTTTATACCTCATAAAGAAACAAGGACCAAAGTTCCTCATTCTGAAATTGTT
GAGAAATGCACAGATTGTGCTGGGAAGGGAGATATTGTATGTACTACATGCAATGCCAACCAAGAGCCTGGAATTAATAAGGAGAATCAGATGTTTGATT
GCCCAACCTGCTATGGAAGGGGTTTGATTGCTCATAGAGATGGGTCTGACACAATATGCACAAAGTGTTCTGGAAAAGGGAAAATCCCCTGTGCAACATG
TGGATCTCGTGGGCTGATAAAATGCAAGAAATGCATTGGAAGTGGCGCTCTTTTGTCATGCAATGTTGCCATTGTTAGATGGAAGACCCTTTCAACTCGC
AAAGTTAGCGCAACAAGTGGGGCAGCATCAGTTCCAGATGAAGTTTTTCACAGAGCCAAAGGTGTCCAATTATGCAACACTCAAGCACATCAATGCAGCC
CGGCATTTTTCGCTGACTCATTCTTTCTCAATAAGTTTTCATCCGAAGTTATTGCTGAGAGAGCTTCTGTACCTCCCACTGCGAGGGTCATATGTGAGAG
GCATGCCATATCTGTTGTGCCAGTGACACGCGTCACCATGACTCATCGTGACCGTTCATTCAGTTTTTACATCATTGGTTTTAGCAGGGAGGTATACTTG
AAGGACTACTATCCTTCTAGGTTTTGTTGGGGGTTATGCCCTTGCTTGGAGTGGTTAAAGTTGTAA
AA sequence
>Potri.006G095400.1 pacid=42768199 polypeptide=Potri.006G095400.1.p locus=Potri.006G095400 ID=Potri.006G095400.1.v4.1 annot-version=v4.1
MEEPLFSENRSELGESEKWSSYQFVGRTGSVLPTASVSVDEIRSAAASSDYYPPSIHAALLTSPEPNPTEQEAIVYQGGYVGGDYGGSTNEFQRQILDEV
EIRELLIDHVGHRCCWGSRPARTWKIHAVEDCNVYIGSLETFIEEREIIRETEPYHGGNIVGKDTAPELGVWELDLRSQFPVLFIPHKETRTKVPHSEIV
EKCTDCAGKGDIVCTTCNANQEPGINKENQMFDCPTCYGRGLIAHRDGSDTICTKCSGKGKIPCATCGSRGLIKCKKCIGSGALLSCNVAIVRWKTLSTR
KVSATSGAASVPDEVFHRAKGVQLCNTQAHQCSPAFFADSFFLNKFSSEVIAERASVPPTARVICERHAISVVPVTRVTMTHRDRSFSFYIIGFSREVYL
KDYYPSRFCWGLCPCLEWLKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38000 chaperone protein dnaJ-related... Potri.006G095400
[exp]
0 1
AT5G18810 SCL28, At-SCL28 SC35-like splicing factor 28 (... Potri.008G196700
[exp]
3.74 0.7768
AT5G52580 RabGAP/TBC domain-containing p... Potri.006G066300
[exp]
6.92 0.7592
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.015G005000
[exp]
9.32 0.7664
AT2G26970 Polynucleotidyl transferase, r... Potri.001G222300
[exp]
14.28 0.7569
AT5G23710 DNA binding;DNA-directed RNA p... Potri.003G221301
[exp]
16.52 0.6782
AT5G67140 F-box/RNI-like superfamily pro... Potri.005G140000
[exp]
17.74 0.7314
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Potri.012G085700
[exp]
25.09 0.7536
AT4G32750 unknown protein Potri.006G241200
[exp]
31.12 0.7002
Potri.017G120050
[exp]
34.69 0.7163
AT1G50440 RING/FYVE/PHD zinc finger supe... Potri.008G005800
[exp]
40.43 0.7141

Potri.006G095400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.