Plant FIBer expression Database

Potri.006G095600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01160 336 / 4e-112 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017185
[exp]
466 / 8e-162 AT5G01160 325 / 9e-109 RING/U-box superfamily protein (.1)
Lus10021125
[exp]
428 / 2e-145 AT5G01160 295 / 1e-95 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G095600.1 pacid=42768553 polypeptide=Potri.006G095600.1.p locus=Potri.006G095600 ID=Potri.006G095600.1.v4.1 annot-version=v4.1
ATGCTGATTCGACTTAGCAAGCCATCATCAGAAACTGGTGGCGGCGGTGCTGCTGGTGGTGGAGGAGGGGCGGTCGTGAAACCCTCAACGGCAGAAACAG
TGACGGTTGCTTGCCCAGACCACCTTGTACTTGCTGACCTTCCCGTAGCAAAAGGCATTGGGAGTGCAACCGCTGCTACCATTGTCAAGACTGTGGGCCG
CAGATCGCGGCGTCAGCTTGGCGAGCGAGTCCATTTTTGCGTCCGCTGTGATTTCCCAATTGCCATCTACGGTCGCCTGAGTCCTTGCGAGCATGCTTTC
TGTCTTGATTGTGCTAGGAGCGATTCAATATGCTATCTTTGTGATGAACGTATTCAGAAGATTCAGACAATCAAAATGATGGAGGGGATCTTCATCTGTG
CAGCTCCTCATTGTCTTAAGTCTTTCCTGAAGAGTTCTGAGTTTGAAGCTCATATTCATGATAGCCATGCTGACCTTCTACAACCAAATGCAGTGAAAGA
TGAGGGCAACGAGTATGAAGTTCAGAGTACTAAACAACCAACAGCATCAGATTCCACTGTTCGAGCTCCTCCAAGGCCAGTTATTTCACCTGGTTCAAGT
TCTCAGCTTCTTGATTTTGAAGACAAAGCTCGTCGGCAGCAGCCTAGAGAACCACTACAAAGGCCAATGATGTCAAAACCGCCATATTTTGGGCAAGCCC
AAAATTACCTATTGGAGCCTCAGCTAAATAATAACCATCCTCCAGGGTTTGACCGACCTGGCCAACAGAGTCATTTTCAACAGATCACACAGGGTCATCC
ACAGCAAGAATCCAGCCAGTTTGCAGACAAGCAACAGGGAATGGTATCTGAGACCCCCATGCCTGAATACCCGCCTATGCATTCCATTCAACCACCAAAC
TTTGTTGTGCCAATGAATTCGAATCCTCTATTAACTCCTCAATTTGGTCTTCCTCCTTTCCAAACTGAGGGAGCTCAGCCATTCTATGTTGCACCCTATG
AGATGGGCCAGATGGCCAGGCCAGATTCAGCACCAGATGGTGGAGCAGAACAAGGGTCTTTGTTGGGCTTCCCACCAGGCCCAGCAGGTGGTATGAATTT
CATGGCAAATTATTCTCAGCCCTGGAATTCTGGACCAGCACCAGGGAGCCAGGGAATTCCTGATGCTTTTGCAAACTCGTCAGATTCTCAGGGAAATATT
GCATTTTATCAAGGAGACTATGGACGAAATCCAGGAATTCTACCAATGGTCCCTCCTCCCCCACCCACTGCCAACAAGGGGATGGAAGCTATACATGCTG
GTAATATGGATCATCGAGATGGCAAAGGTATATTGGCACCACAGCCCTTTAAACATCCACCACCACCTCCGCCTCCCTTGCCTCATGCATCACAGTCCAA
ACGGGGTAAATATTATTCTGGGGATATGGGCCATGAGGGACCTGATTTTGGATGGCAGCATGAGAACCGTGATGGTTTTGGAAGTGGGCAAGAGTAG
AA sequence
>Potri.006G095600.1 pacid=42768553 polypeptide=Potri.006G095600.1.p locus=Potri.006G095600 ID=Potri.006G095600.1.v4.1 annot-version=v4.1
MLIRLSKPSSETGGGGAAGGGGGAVVKPSTAETVTVACPDHLVLADLPVAKGIGSATAATIVKTVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAF
CLDCARSDSICYLCDERIQKIQTIKMMEGIFICAAPHCLKSFLKSSEFEAHIHDSHADLLQPNAVKDEGNEYEVQSTKQPTASDSTVRAPPRPVISPGSS
SQLLDFEDKARRQQPREPLQRPMMSKPPYFGQAQNYLLEPQLNNNHPPGFDRPGQQSHFQQITQGHPQQESSQFADKQQGMVSETPMPEYPPMHSIQPPN
FVVPMNSNPLLTPQFGLPPFQTEGAQPFYVAPYEMGQMARPDSAPDGGAEQGSLLGFPPGPAGGMNFMANYSQPWNSGPAPGSQGIPDAFANSSDSQGNI
AFYQGDYGRNPGILPMVPPPPPTANKGMEAIHAGNMDHRDGKGILAPQPFKHPPPPPPPLPHASQSKRGKYYSGDMGHEGPDFGWQHENRDGFGSGQE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01160 RING/U-box superfamily protein... Potri.006G095600
[exp]
0 1
AT5G02800 CDL1 CDG1-like 1, Protein kinase su... Potri.006G133300
[exp]
1.41 0.9105
AT1G07310 Calcium-dependent lipid-bindin... Potri.008G064900
[exp]
3.46 0.8776
AT5G61220 LYR family of Fe/S cluster bio... Potri.009G079800
[exp]
4.69 0.8937
AT3G04610 FLK flowering locus KH domain, RNA... Potri.005G056100
[exp]
9.00 0.8773
AT2G18510 EMB2444 embryo defective 2444, RNA-bin... Potri.007G028300
[exp]
10.00 0.8826
AT2G32600 hydroxyproline-rich glycoprote... Potri.006G121300
[exp]
12.96 0.8774
AT2G20560 DNAJ heat shock family protein... Potri.017G016100
[exp]
13.67 0.8740
AT3G07565 Protein of unknown function (D... Potri.007G132700
[exp]
15.90 0.8609
AT1G36310 S-adenosyl-L-methionine-depend... Potri.002G091300
[exp]
17.32 0.8739
AT4G26000 PEP PEPPER, RNA-binding KH domain-... Potri.018G004000
[exp]
17.88 0.8751

Potri.006G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.