Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54130 320 / 3e-111 Josephin family protein (.1) AT2G29640 57 / 1e-09 JOSL JOSEPHIN-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110300 [exp] 418 / 5e-150 AT3G54130 347 / 8e-121 Josephin family protein (.1) Potri.001G249400 [exp] 43 / 4e-05 AT2G29640 230 / 2e-75 JOSEPHIN-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027757 [exp] 352 / 3e-123 AT3G54130 333 / 4e-115 Josephin family protein (.1) Lus10035536 [exp] 348 / 5e-122 AT3G54130 323 / 4e-111 Josephin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02099 [poplar] [flax] Josephin Josephin
Representative CDS sequence Show only first row Show all	>Potri.006G095700.1 pacid=42767879 polypeptide=Potri.006G095700.1.p locus=Potri.006G095700 ID=Potri.006G095700.1.v4.1 annot-version=v4.1 ATGGAAATGGAAGGAGTGAGCAATGGAGGGATGTTGTACCACGAGGTACAAGAGGCCAAGCTATGCGCCGTACATTGCGTTAACACAGTGTTACAAGGAC CTTTCTTTTCAGAATTCGATTTGGCGGCGCTTGCTTCCGATCTCGATTCAAAAGAACGCCAGATGATGCAAGAGGGAAACTTCTTCACCTCATCCGTTGG TGATTACCTCTCCGCCGAGTCCCATAATGTGTCCTTAGGCGGTGATTTTAGTATCCAGGTTTTACAAAAGGCTTTAGAGGTGTGGGATTTGCAGGTCATT GCCTTTGACAGTCCAGTTGCTGAGCATGCGCAGATTGACCCTGATCTAGGAAATGCATTTATTTGTCATTTGCATGATCATTGGTTCTGCATTAGGAAAG TGAATGGGGAGTGGTATAACTTTGACAGCCTCTATGCAGCTCCGCAACACTTATCCAAGTTTTACCTTGCAGCCTGCATGGATTCTTTTAAAGATTCTGG CTGGAGCATTTTCCTGGTGATAGGAAACTTCCCAAAAGAGTTTCCCATTGAATCCTCTGAAGCTCCCAACGGTTATGGACAGTGGCTGTCTCCTGAAGAT GCTGAGAGGATTACTAAATCCTGCAACACAACAGAGTCTCCACAGACAATCGATTCCACTCAACAGGCATATCAAGAAACTCTGTTAAAAAAATAA
AA sequence Show only first row Show all	>Potri.006G095700.1 pacid=42767879 polypeptide=Potri.006G095700.1.p locus=Potri.006G095700 ID=Potri.006G095700.1.v4.1 annot-version=v4.1 MEMEGVSNGGMLYHEVQEAKLCAVHCVNTVLQGPFFSEFDLAALASDLDSKERQMMQEGNFFTSSVGDYLSAESHNVSLGGDFSIQVLQKALEVWDLQVI AFDSPVAEHAQIDPDLGNAFICHLHDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAACMDSFKDSGWSIFLVIGNFPKEFPIESSEAPNGYGQWLSPED AERITKSCNTTESPQTIDSTQQAYQETLLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	0	1
AT1G43690			ubiquitin interaction motif-co...		Potri.005G191300 [exp]	2.44	0.7560
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	2.64	0.8439
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	6.32	0.7792
AT2G18900			Transducin/WD40 repeat-like su...		Potri.018G091100 [exp]	7.74	0.7971
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Potri.001G402500 [exp]	9.53	0.7527
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	9.59	0.8116
AT2G47420		DIM1A	adenosine dimethyl transferase...		Potri.014G121200 [exp]	10.77	0.7881
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.015G094500 [exp]	18.76	0.7280
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	19.44	0.7498
AT2G19540			Transducin family protein / WD...		Potri.007G094000 [exp]	23.06	0.7394

Compare expression of checked genes

Potri.006G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.