Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAC3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38040 869 / 0 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110500 [exp] 1215 / 0 AT2G38040 890 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.014G081000 [exp] 641 / 0 AT2G38040 699 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021126 [exp] 724 / 0 AT2G38040 765 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Lus10017184 [exp] 687 / 0 AT2G38040 755 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF01039 [poplar] [flax] Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence Show only first row Show all	>Potri.006G095800.3 pacid=42770279 polypeptide=Potri.006G095800.3.p locus=Potri.006G095800 ID=Potri.006G095800.3.v4.1 annot-version=v4.1 ATGGCTTCTATATCGAATTCGGCAGTTGCATTTACTGGAACGACAGCTTCTGATCTTCTTCGAAGCTCGAAGAGTGGTGGTGCTAATGGTATTCCTCTGA GAACCCTAGGAAAAGCGCGATTCAGTGTGAAAACCAGGGATTTATCGGTGGTTGCGAAGGTTAGAAAAGTTAAGAAGCATGAGTATCCATGGCCTGAGGA TCCGGATCCGAATGTGAAAGGCGGGGTTTTAACTCATCTCTCGCATTTTAAGCCTCTTAAAGAGAAGCCTAAACCAGTTACATTGGATTTCGAGAAACCA CTTGTTGCTCTGGAAAAGAAGATCATTGATGTGCGGAAGATGGCGAATGAAACTGGTTTGGACTTCAGCGATCAGATTGCCTCGTTAGAGAATAAATATC AACAGGCTCTTAAGGATTTATACACACATTTGACTCCTATACAACGTGTGAATATTGCACGCCATCCGAACAGGCCAACATTCCTTGATCACATATTTAG CATAACTGAAAAGTTTGTAGAGCTTCATGGAGATCGAGCAGGCTATGATGATCCTGCTATTGTTACTGGAATAGGAACAATAGATGGTAGAAGATACATG TTCATGGGTCACCAAAAGGGAAGAAACACAAAAGAGAACATTATGCGTAACTTTGGGATGCCTACTCCTCATGGCTATCGGAAGGCTTTACGCATGATGT ATTATGCGGATCACCATGGCTTCCCTATAGTTACTTTAATTGATACACCTGGAGCATTTGCAGACCTTAAATCTGAGGAACTAGGCCAAGGTGAAGCCAT TGCTCATAATTTGAGGACCATGTTCGGCCTAAAGGTTCCAATTGTTTCTATTGTTATTGGGGAAGGTGGCTCTGGTGGTGCTCTGGCAATTGGATGTGCT AATAAATTGTTAATGCTTGAAAATGCAGTTTTCTATGTGGCAAGTCCTGAAGCATGTGCAGCAATTTTATGGAAGACTGCCAAAGCTGCTCCAAAGGCAG CTGAGAAGCTTAAAATCACTGGTCCCGAGTTGTGCAAGCTGCAAGTTGCAGATGGAATCATACCTGAGCCATTGGGAGGAGCACATGCAGATCCATCATG GACCTCACAACAGATAAAGAATGCAATTAATGAAGCTATGGATGAGCTCAACAAAATGGACACAGAAGCACTACTAAAACATCGCATGCTTAAGTTCCGA AAAATTGGTGGGTTTCAAGAAGGGGTCCCGGTTGATCCTATAAAAAAAGTCAACATGAAGAAGAAAGAAGAACCCGTTGCAGGAAAGACTCCAGTTATAG AATTGGAGTATGAGGTTGAAAAACTGAAACAGCAAATTTCAAAGGCCAAGGAGTCATCTAGCAAGCCCACGGAGTTGGCTTTAAATGAGATGATAGAGAA ACTAAAGAAGGAGATTGATCTTGAATATTCTGCAGCTGTTGAAGCGATGGGCTTAAAGGACAGGTTTTTGAATTTGCGGGAAGAATGTTTAAAAGCAAAT TCACAGGACCAACTCATGCATCCAGTTCTAATGGACAGGATTGAAAAACTCAGTGATGAATTTAACAAGGGCCTGCCAACTGCTCCTAACTATACCAGCC TGAAGTATAAGCTTGACATGTTGAAGGAGTTTTCTATAGCCAAAAGCAACTTGGAGAAGAAGGGCAAGGGTGAGGAACTGAAACTGGATATCAATAAGAA ACTCAAAGAGGTTATGGATCAGCCTGAAATGAAGGAGAAGATGCAAGCTCTGAAGGCAGAAGTTCAGAAGTCAGGGGCTTCCAGTGCTGCAGATTTAGAT GATGGCACAAAGGAGAGCATATCAAAGATGAAGAAAGAGATAGAGTTGGAATTGGCGAGTGTCCTAAAGTCCATGGATTTGAATGTTGAAATTGTAAGGG CCAAGGAACTCATCGATCAAGATTTGAAGGCTAAGGTAGAAAGTTTAGAGGAGGAAACTAACAAGAAAATTGAAAATCTAATGAAGTCATCGGATCTTAA AAACACTATCAAGTTACTGAAGTTGGAAATGGCCAAGGCAGGGAAAACACCCGATGCTGCATTAAAAAATAAAATTGAGGCTTTAGAACAACAAATAAAG CGGAAGCTTTCAGCTGCCATTAGCTCCTCAGAAATAAAGGAGAAGCACGAAGAGCTGCAGGCAGAGATCAAAGCGCTAGAAGGTGATGGGGGATTAAATG GGAGTTTGAAAAATGATGATCTAAAGGAAGCAAGTTCCAAGTATGATGAATCCAGGGTATAA
AA sequence Show only first row Show all	>Potri.006G095800.3 pacid=42770279 polypeptide=Potri.006G095800.3.p locus=Potri.006G095800 ID=Potri.006G095800.3.v4.1 annot-version=v4.1 MASISNSAVAFTGTTASDLLRSSKSGGANGIPLRTLGKARFSVKTRDLSVVAKVRKVKKHEYPWPEDPDPNVKGGVLTHLSHFKPLKEKPKPVTLDFEKP LVALEKKIIDVRKMANETGLDFSDQIASLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHIFSITEKFVELHGDRAGYDDPAIVTGIGTIDGRRYM FMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTLIDTPGAFADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA NKLLMLENAVFYVASPEACAAILWKTAKAAPKAAEKLKITGPELCKLQVADGIIPEPLGGAHADPSWTSQQIKNAINEAMDELNKMDTEALLKHRMLKFR KIGGFQEGVPVDPIKKVNMKKKEEPVAGKTPVIELEYEVEKLKQQISKAKESSSKPTELALNEMIEKLKKEIDLEYSAAVEAMGLKDRFLNLREECLKAN SQDQLMHPVLMDRIEKLSDEFNKGLPTAPNYTSLKYKLDMLKEFSIAKSNLEKKGKGEELKLDINKKLKEVMDQPEMKEKMQALKAEVQKSGASSAADLD DGTKESISKMKKEIELELASVLKSMDLNVEIVRAKELIDQDLKAKVESLEEETNKKIENLMKSSDLKNTIKLLKLEMAKAGKTPDAALKNKIEALEQQIK RKLSAAISSSEIKEKHEELQAEIKALEGDGGLNGSLKNDDLKEASSKYDESRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.006G095800 [exp]	0	1	CAC3.1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.010G126600 [exp]	3.60	0.8151
AT1G63850			BTB/POZ domain-containing prot...		Potri.003G131000 [exp]	6.63	0.6843
AT1G24360			NAD(P)-binding Rossmann-fold s...		Potri.008G178700 [exp]	9.16	0.7154
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.012G128200 [exp]	15.23	0.7225
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.010G183300 [exp]	16.43	0.7062
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.002G016300 [exp]	17.46	0.6376	Pt-SMT1.1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.013G019800 [exp]	22.20	0.6903
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.005G225700 [exp]	23.66	0.7146
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	31.24	0.6928
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Potri.008G220400 [exp]	42.42	0.7003	Pt-MFP2.3

Compare expression of checked genes

Potri.006G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.