Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09100 949 / 0 mRNA capping enzyme family protein (.1.2) AT5G01290 869 / 0 mRNA capping enzyme family protein (.1) AT5G28210 673 / 0 mRNA capping enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110700 [exp] 1198 / 0 AT3G09100 914 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.014G160500 [exp] 42 / 0.0009 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027759 [exp] 873 / 0 AT3G09100 795 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10035534 [exp] 847 / 0 AT3G09100 770 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10040496 [exp] 285 / 3e-89 AT5G28210 261 / 1e-82 mRNA capping enzyme family protein (.1) Lus10034033 [exp] 42 / 0.0002 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain CL0078 [poplar] [flax] DNA_ligase PF01331 [poplar] [flax] mRNA_cap_enzyme mRNA capping enzyme, catalytic domain CL0021 [poplar] [flax] OB PF03919 [poplar] [flax] mRNA_cap_C mRNA capping enzyme, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G096000.5 pacid=42768721 polypeptide=Potri.006G096000.5.p locus=Potri.006G096000 ID=Potri.006G096000.5.v4.1 annot-version=v4.1 ATGGTTGTTACCATGGATTTAAATGTGTCGCCGGTACCTGAAGGCGACGAAGATAATTCTGAAGGGCACGTAGAAGAATACAGTCCTGCTGGTGAACGGT CAGAGTCTGCTGTCGAAACTGCCCGCAGGGAACGTGAAGAAAGACGTAAGCGTTTGAGAAATGAATGCTCAGATGACAGACCTGTACATGTGTCTCAGCA ACCAGTGCACGATCAATTTTTTCCATCTAAACGCTATAAATCATATGATAAAAGCAAACTTCCTCCTGGCTGGTTGGACTGTCCTGCATTTGGCCAGGAA ATAAATTGTATCGTTCCTTCTAAGGTTCCACTCGGTGAAGCTTACAATGACTGCATTCCTCCTGGTAAAAGATACTCCTTTAAACAAGTCATTCATCAAC AAAGAGTTTTAGGAAGGAAACTTGGTCTGGTGATTGATTTGACAAATACTACTCGCTACTATTCAACAGTAGATTTGAAGAAAGAAGGTATCAAGCATGT CAAGATATATTGCAAGGGGCGTGATGCTGTACCAGAGAATACAGCTGTAAATACCTTTGTTTATGAGGTCATGCAATTCCTCTTGCGTCAGAAACATACA AAGAAGTATATTCTTGTTCATTGTACACATGGGCATAATCGTACAGGATATATGATAGCTCATTATTTAATGCGTTCACAACTAATGTCTGTCACTCAGG CAATAGACATATTTGCTGAAGCACGTCCTCCAGGAATATACAAGCCAGATTATATCGATGCCTTGTACTCATTCTATCATGAAAGAAAGCCAATAACGGT TGTTTGCCCACCAACTCCAGAGTGGAAGAGGTCTTCTGAATTTGATCTCAATGGTGAGGCAGTGCCTGATGATGATGATGATGATGGAGGTTCAGCTACT AGCGTGCATGGCAATCATGAGATGGCTGTCACAATGACAAATGACGATGTTCTGGGGGATGAAATACCTAATGACCAGCTGGATGCACTGCGGCAGTTTT GCTACCAAGCACTTAAGTTGAATGGAAGAGGAAATTCACAATTCCCAGGATCACACCCCGTTTCTCTAAGCAGGGACAACTTACAGCTGTTAAGGCAGCG TTATTATTATGCAACATGGAAGGCTGATGGAACAAGATACATGATGTTAATTACAGTGGATGGGTGCTTTTTGATAGATAGGAATTTTAAATTCCGAAGG GTACAGATGAGATTTCCTTGTAGATACACCAATGAAGGTCCAGCTGATAAGATGCACCACTTTACATTACTTGATGGGGAGATGATTATTGATACTATGC CGGACTCACAGAAGCAGGAGAGAAGATACCTTATCTATGATATGATGGCAGTCAACCAAGTGTCTGTCATAGAGCGGCCCTTTCATGAACGATGGAAGAT GCTTGAAAAAGAAGTGATTGAGCCCCGAAATACTGAACGCCAAAGTATTTACCAGAGTCGAAATCCAAATTATAGATATGACCTGGAACCCTTCAGGGTG AGAAGAAAGGATTTCTGGCTGCTTTCTACTGTTACCAAGGTCCTAAAGGAATTTATTCCAAGGCTTTCACATGATGCAGATGGTCTTATTTTTCAGGGTT GGGATGATCCCTATGTTACTCGCACTCATGAAGGCCTTCTGAAGTGGAAATATCCTGAAATGAACTCAGTTGACTTTCTATTTGAGGTTGATGATGATGA CCGTCAGTTGCTTTATCTGCACGAGCGAGGGAAAAAGAAACTGATGGAAGGCCACCGAGTTTCCTTCAAAGATGCTCTAGATCCCTCTTCATACTCTGGG AAGATAGTTGAGTGTTCTTGGGATTCAGAGGAACGTGTGTGGGTCTGTATGCGGATCCGGACTGATAAATCAACACCAAATGATTTCAATACCTACAAGA AGGTTATGCGAAGCATCAATGACAATATAACAGAGGATGTGTTGTTGAATGAGATTTATGAGATCGTTTGCCTGCCCATGTATGCTGATAGGATCAGGAT TGAGAGTAAAGCTCAGCAGCATGCAAATGCGGTACGTCGTAAGTGA
AA sequence Show only first row Show all	>Potri.006G096000.5 pacid=42768721 polypeptide=Potri.006G096000.5.p locus=Potri.006G096000 ID=Potri.006G096000.5.v4.1 annot-version=v4.1 MVVTMDLNVSPVPEGDEDNSEGHVEEYSPAGERSESAVETARREREERRKRLRNECSDDRPVHVSQQPVHDQFFPSKRYKSYDKSKLPPGWLDCPAFGQE INCIVPSKVPLGEAYNDCIPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYSTVDLKKEGIKHVKIYCKGRDAVPENTAVNTFVYEVMQFLLRQKHT KKYILVHCTHGHNRTGYMIAHYLMRSQLMSVTQAIDIFAEARPPGIYKPDYIDALYSFYHERKPITVVCPPTPEWKRSSEFDLNGEAVPDDDDDDGGSAT SVHGNHEMAVTMTNDDVLGDEIPNDQLDALRQFCYQALKLNGRGNSQFPGSHPVSLSRDNLQLLRQRYYYATWKADGTRYMMLITVDGCFLIDRNFKFRR VQMRFPCRYTNEGPADKMHHFTLLDGEMIIDTMPDSQKQERRYLIYDMMAVNQVSVIERPFHERWKMLEKEVIEPRNTERQSIYQSRNPNYRYDLEPFRV RRKDFWLLSTVTKVLKEFIPRLSHDADGLIFQGWDDPYVTRTHEGLLKWKYPEMNSVDFLFEVDDDDRQLLYLHERGKKKLMEGHRVSFKDALDPSSYSG KIVECSWDSEERVWVCMRIRTDKSTPNDFNTYKKVMRSINDNITEDVLLNEIYEIVCLPMYADRIRIESKAQQHANAVRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	2.23	0.9162
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	2.44	0.8940
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	3.00	0.9086	Pt-FHY3.2
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	4.24	0.8685
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	4.24	0.9138	MYA1.1
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	6.00	0.9048	TTN8.2
AT3G49490			unknown protein		Potri.012G007000 [exp]	7.00	0.8933
AT5G57940		ATCNGC5	cyclic nucleotide gated channe...		Potri.018G106100 [exp]	7.93	0.8349	CNGC5.1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	8.94	0.8984	CPC902,TTN8.3
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	10.67	0.8672

Compare expression of checked genes

Potri.006G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.