Plant FIBer expression Database

DEX1.1 (Potri.006G096100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol DEX1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09090 1226 / 0 DEX1 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G110800
[exp]
1514 / 0 AT3G09090 1165 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035533
[exp]
1127 / 0 AT3G09090 1164 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Lus10027760
[exp]
1124 / 0 AT3G09090 1160 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF13517 VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
Representative CDS sequence
>Potri.006G096100.1 pacid=42769574 polypeptide=Potri.006G096100.1.p locus=Potri.006G096100 ID=Potri.006G096100.1.v4.1 annot-version=v4.1
ATGGAACCCTCAGCGCTTAGGGTTCTCTTGGTCTGCTTCTTATTATTCACCTCTTCCATCCATGGAGAGGAATCCAACAAGAGTAAATTTCGAGACCGAG
AAGCTACCGATGATGCCCTTGGTTACCCTCACTTAGATGAGGATGCTTTGTTGAATACGCAGTGCCCTAGAAATTTAGAGCTGAGGTGGCAAACTGAAGT
GAGCTCTAGCGTTTACGCTACTCCGTTGATCGCCGATATCAATAGTGATGGAAAACTTGATATAGTGGTTCCTTCTTTTGTTCACTATCTTGAAGTTCTA
GAAGGTTCCGATGGAGACAAAATGGCAGGTTGGCCTGCATTTCACCAGTCAACAGTGCACGCAAGTCCTCTCTTGTATGATATTGACAAGGATGGTGTGA
GGGAGATTGCTTTGGCTACCTACAATGGAGAAGTTCTCTTTTTCAGGGTGTCAGGATACATGATGACTGATAAACTGGAAGTACCTCGTAGGAGAGTTAA
AAAGAATTGGTATGTGGGTCTGGATCTGGATCCTGTGGATCGTTCTCATCCAGATGTTCACGATGACCAACTTGTCTTGGAGGCTTCTGAGAAGAAATCC
GAGTCTCACACAACTGGAAGTGCACATCAAAATACACCTGAAACGGACTCTTCGATTTCTACATCAACAGAGAATAGTCATCCAGCAAATGCATCCAGTG
AGACTGAAAAGAAAATGAACGAGAATCAAACGGAACCAATTATCAAACTGCCCTTGCATGTGGATAACTCTTCTCTAGGTGCCAGGTCAAATGGAACCGA
TAAAGCTGAGAGTGGAACCAGTAATGCACATAATGGAACCAATACGGTAGATAAGGGAACCAATAATGCAGAAAATAGAACAAACACTGGGAGAAGGCTT
CTCGAAGATGACAATTCAAAGGGTTCACATGAAGGTGGCTCAGAATCTAAAGAGAATGACCATGAAAATGTTCATGCAGCAACTGTTGAAAATGATGAAG
GGTTAGAAGCAGATGCTGATTCATCTTTCGAGTTATTCCGTGATAGTGATGAATTAACCGATGAGTACAGTTATGATTACAATGATTACGTAGACGAATC
CATGTGGGGAGATGAAGAATGGACAGAAGGGCAACATGAGAAATTGGAGGATTATGTGAATATTGACTCACATATCTTGTGCACACCTGTGATAGCTGAC
ATTGATAATGATGGAGTAGCTGAAATGATTGTTGCAGTTTCATATTTCTTTGATAACGAGTATTATGACAATCCAGAGCATTTGAAAGAACTCGGTGATA
TAGATGTTGGGAAATATGTTGCCAGTTCTATTGTTGTATTCAACCTTGATACAAAGCTAGTTAAGTGGACTCGAGAACTAGATTTAAGTACAAATACTGC
AAACTTCCGTGCGTATATATACTCTTCACCTTCAGTGGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGGACTTCATTTGGCTTGTTCTAT
GTCCTGGATCATCACGGAAATATTAGGGAAAAATTCCCTCTTGAAATGGCTGAAATTCAAGGTGCTGTAGTTGCAGCTGATATCAATGATGATGGGAAAA
TTGAACTAGTGACCACTGATGTACATGGAAATGTTGCTGCGTGGACATCACAAGGAAAAGAAATTTGGGAAAGAAACCTTAAGAGTCTTATTCCCCAGGG
TCCAACTATAGGTGATGTTGATGGGGATGGTCGTACTGATATTGTAGTTCCTACTCTATCAGGGAACATATACGTTCTTAGTGGCAAGGATGGTTCTATT
GTTCGGCCTTACCCATATAGAACTCACGGGAGAGTGATGAATCAAGTTCTTCTCGTTGACTTGAGTAAACGTGGGGAGAAAAGCAAGGGACTCACACTTG
TTACAACATCATTTGATGGTTATTTGTACCTTATAGACGGACCAACTTCTTGTGCTGATGTTGTTGATATTGGTGAAACTTCATACAGCATGGTCTTGGC
AGATAATGTTGATGGTGGAGATGATCTAGATCTCATAGTCTCAACAATGAATGGGAATGTCTTTTGCTTTTCAACTCCTGTTCCACATCACCCTCTCAAG
GCTTGGAGATCTTCTAATCAAGGAAGAAACAACGTGGTGAACCGCTACAACCGTGAAGGGGTTTATGTCACACCTTCATCAAGAAGTTTTCGTGATGAGG
AGGGAAAGAGCTTCTGGGTGGAATTTGAGATTGTAGACAAGTATAGATTCCCATCTGGGTCTCAAGCACCTTATAATGTCACTACAACCCTTTTAGTTCC
TGGCAATTATCAAGGTGAGAGACGAATAAAGCAAAGCCAAATCTTTGACCGTCCAGGAAATTATCGGGTAAAACTTCCAACAGTTGGAGTGAGGACTACT
GGAACTGTTTTGGTGGAGATGGTTGATAAGAACGGGCTCTATTTCTCAGATGACTTCTCCCTTACATTTCACATGCATTACTATAAACTGCTGAAGTGGC
TCCTAGTCCTCCCAATGCTTGGAATGTTTTGTGTGCTTGTCATCCTTCGTCCACAAGAGGCCATGCCCTTACCATCATTTTCAAGGAATACTGACTTGTG
A
AA sequence
>Potri.006G096100.1 pacid=42769574 polypeptide=Potri.006G096100.1.p locus=Potri.006G096100 ID=Potri.006G096100.1.v4.1 annot-version=v4.1
MEPSALRVLLVCFLLFTSSIHGEESNKSKFRDREATDDALGYPHLDEDALLNTQCPRNLELRWQTEVSSSVYATPLIADINSDGKLDIVVPSFVHYLEVL
EGSDGDKMAGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEVPRRRVKKNWYVGLDLDPVDRSHPDVHDDQLVLEASEKKS
ESHTTGSAHQNTPETDSSISTSTENSHPANASSETEKKMNENQTEPIIKLPLHVDNSSLGARSNGTDKAESGTSNAHNGTNTVDKGTNNAENRTNTGRRL
LEDDNSKGSHEGGSESKENDHENVHAATVENDEGLEADADSSFELFRDSDELTDEYSYDYNDYVDESMWGDEEWTEGQHEKLEDYVNIDSHILCTPVIAD
IDNDGVAEMIVAVSYFFDNEYYDNPEHLKELGDIDVGKYVASSIVVFNLDTKLVKWTRELDLSTNTANFRAYIYSSPSVVDLDGDGNLDILVGTSFGLFY
VLDHHGNIREKFPLEMAEIQGAVVAADINDDGKIELVTTDVHGNVAAWTSQGKEIWERNLKSLIPQGPTIGDVDGDGRTDIVVPTLSGNIYVLSGKDGSI
VRPYPYRTHGRVMNQVLLVDLSKRGEKSKGLTLVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPVPHHPLK
AWRSSNQGRNNVVNRYNREGVYVTPSSRSFRDEEGKSFWVEFEIVDKYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFDRPGNYRVKLPTVGVRTT
GTVLVEMVDKNGLYFSDDFSLTFHMHYYKLLKWLLVLPMLGMFCVLVILRPQEAMPLPSFSRNTDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09090 DEX1 DEFECTIVE IN EXINE FORMATION 1... Potri.006G096100
[exp]
0 1 DEX1.1
AT1G77260 S-adenosyl-L-methionine-depend... Potri.002G077100
[exp]
1.00 0.9318
AT3G62360 Carbohydrate-binding-like fold... Potri.002G194000
[exp]
1.41 0.9163
AT4G38270 GAUT3 galacturonosyltransferase 3 (.... Potri.004G206000
[exp]
1.73 0.8891
AT5G56510 APUM12 pumilio 12 (.1) Potri.001G002600
[exp]
5.29 0.8871
AT5G15070 Phosphoglycerate mutase-like f... Potri.004G129900
[exp]
7.68 0.8287
AT5G07720 Galactosyl transferase GMA12/M... Potri.012G068300
[exp]
10.24 0.8774
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Potri.008G075300
[exp]
11.48 0.8809
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.004G074700
[exp]
16.94 0.8387
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.018G065900
[exp]
21.54 0.8456
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Potri.017G057500
[exp]
24.18 0.8608

Potri.006G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.