Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09080 617 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 55 / 4e-07 TAF5 TBP-associated factor 5 (.1) AT3G49660 52 / 2e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 51 / 3e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 51 / 5e-06 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G61210 50 / 1e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 47 / 6e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 47 / 7e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 47 / 8e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263400 [exp] 54 / 5e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G064600 [exp] 53 / 1e-06 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 53 / 1e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 52 / 1e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 51 / 5e-06 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 49 / 1e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G049400 [exp] 49 / 3e-05 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.009G058000 [exp] 47 / 5e-05 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.007G009500 [exp] 46 / 0.0001 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017180 [exp] 1153 / 0 AT3G09080 608 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021129 [exp] 72 / 1e-13 AT3G09080 45 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 52 / 2e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 52 / 2e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 51 / 5e-06 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10011863 [exp] 50 / 1e-05 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 50 / 1e-05 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10038960 [exp] 50 / 1e-05 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10027252 [exp] 49 / 3e-05 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10043135 [exp] 49 / 5e-05 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.006G096400.10 pacid=42768325 polypeptide=Potri.006G096400.10.p locus=Potri.006G096400 ID=Potri.006G096400.10.v4.1 annot-version=v4.1 ATGAAAATCAACAATCGCAAACTCAAGAAATCAGAAACATCGTCATCTTCAAAGCTGGTTTTGGAAGAAATTATTGGATTAACAACGAAGAATGCTAACG GACTAGCTTCAAATACATCAACGGCAAGATTTGCTTATATTGCAGGATGTGTTGTGGTTGTTTACAATGTGGATTCAACTACTCAATCGCATCTCTTGGT GTCTCATAGACCGCCCAAACCCTTGACTTGTGTTGCCATGTCACGTGATGGCCGGTTCATAGCTGCTGGAGAGTCTGGGAATCAACCTGCAGTGTTAGTG TGGGACTGTTCGACCATGAGTTTTGTATCTGAACTGAAGGGTCATCTTTATGGAGTTGAATGTATTGCTTTCTCACCCAACGGAGAGCATGTTGTTTCGG TTGGAGGATACATATATCTTTGGGATTGGAGAAGTGGGATTTTGGTGACCAAGCTTAAAGCAAGTTCATCTTGTTCTGCTGTTACATCTGTGAGCTTCTC GTCCGATGCGAAATTCATTGTAACTGCTGGAAAAAAGCACTTGAAATTCTGGACAGTTGGATCTTCTCCAGGGACTCGCTTAAGTAATGGGACAGGATCA CTTGCAATGCATGGAAAACCTGTTAATCTTGGACCTCAGAAAGGAAGTTCATTCATTTCTGTCACATCTGCAATCGGGATGAATAATAGTCCTGACACAC CTGAACAAGCTGGTGATTTGTTTCCCATTTATGTGTTGACGGATGAAGGTACTTTATGCCTTGTGGATTCTGGGCTGTCAGTAAGAAAGACGGTGGACTT AAAGGTAGAACAAGGCTATGCACTATCTGCATCCGATAAGCTCATTGCTTGTGCTTGTTGTAATGGAATTGTAAAACTCTTTACTAGTGAGACACTCAAT CATGCCGGAACTCTGCTATATTCAAATGCCAAAAGTTTCCAGGGGGACACTAATTTTCATTTTCAGACTACAGAAGTTCAAAAGGATTCTCAACTTGTGC CTGCTCTGCCTGATGCAATTGCTTGTCAATTCTCTACCTCAGAAAAGTTGGTGGTTGTTTATGGAGATCATACTCTCTATATATGGAATATTCATGATAT GAAAGAGGCAACGAGGTGCTATGCATTAGTTTCACACTCTGCATGCATTTGGGATGTCAAGAATCTTTGTTGTGAAAACATGCACGATCCATCTCTAGCA TGTGTTGCAAGAGGTTGTTCTGGTGGAGTTTCATTTGCAACATGCTCGGCAGATGGTACTATTAGGTTGTGGGATCTTACTTTGCAATCCAATTTGGTAG AGGATGATGCAGATCAACAATCCTTGAAGGCCAAACAAATGGGCGGCACACGTTTAGTAAGTTCTGGGATTTTGGAGCGAGACACTGCAGAGGCAGGAGT TGACACTCAAGGGTTTCGGTCAATGGCTGCTAGTTCAGATGGAAAGTACCTGGTTGCTGGTGATTGCGAGGGAAATCTTCACATATATAACCTACTAACT TCTGATTATGCATGTTTTCAGGGCATTCATGACGCAGAGATCCTCTCATTGAGCTTCAGCTTGTCAAGCAAGAAACATGTTATTTCTGGAGATGTGGTGG ATAGCAATTGCTTCCTCGCATCAGGGGGGCGAGATCGAATTATCCATCTTTATGATGTCGAAAGGAATTTTGATCTCATTGGAAGTATTGATGACCATTC AGCCGCCGTCACTTCTGTAAAACTCACTTTCCATGGTCATAAGATTCTCAGTTGCAGTGCTGATAGGTCACTAGTGTTCCGAGATGTTTGTGTTGTAGAG AGCTGTTGTAAGATCTCTCGACGTCATCATCAAATGGCGTCTCATGGAACCGTGTATGACATGGCTTTGGATCCAGCAATGGAGTTTGTTGTTACAGTTG GGCAGGATAAGAAGATAAACACATTCGACATTGCTTCTGGGAAGCTAACTAGATCATTCAAGCAGGATAAAGATTTTGGAGACCCAATAAAGGTCTCAAT GGACCCAAGCTGCAGTTATTTGGCATGCTCCTACTCTAACAAGTCTTTGTGCATGTATGATGCAATCAGTGGAGAGTTGGTCACACGAGCTGTGGGACAT GGTGAAGTAATAACTGGTGTGATCTTTTTGCCTGACTGCAAGCATGTGGTATCTGTTGGGGGCGATAGTTGTATTTTTGTGTGGAAACTACCGAGTCGTA TGTCTTCCAGGATGCTGCAGCGAATGAAGGAAAATGCTGTTCCCTTGTCCCCAAAAGACCTGGGCCCACCATCTGCTTTTAATCAAATCGTGTTTTCTGA AGCAGAAGACCAGCAGTGCACATACAATGCTGAAAAAATACTTTTGCCTGAAAACTCCAACCAATTTGGAGAAAAAAAGTTTTATCAAGGAGAGCGGTCT CCACGGATCTCAATGTTTAGATTTAGCGTTTCGAGACTTCCAAGATGGGCACAAGCTAAAGTTGAAGGCTCTAATAGTGTTTCAAAAAATCCAGATATCA CTTCATTTCAGCAACCAGAACTAAAAACTTGCCCTCCGGATGTTGACGGTGGGGAATGTGGTGCATTGTGCCCAGAAGTTCAAAGTCCACTCGGTACTGT TGTGGGAAGCAGGGATTCATACATCAGTAGCTTATCTGGAAGTTCTGCTAGTGAAAACAACCAAAGCTCACCAACGCCTCTAGATACTCGTAGTTGCTTT GCCATGGACAAACGTTGGCTCAACGTTTATACTGTATGTTTGGATCCACTCAATTCTCCGGAGATGCCTCATTTAGCAGATCCGAACATGTTAGTTGCCT CACCAAATTCGAAAATACCAAGTAATGGTGAGTGCTCTTCCGCGCAAGCTAACCTTGCTGTAAAAGAAGAGCGCAAAGCTAGTTCAAAAAGACATGCCTG TTCCAATAATTATGGCTTTCTTGGGAAAAGTGAAAATTTATCTGGCATCCACAGTACAAGTAAATGCCATAAGGCAGTTGCTGGTCATGTGACAGAGCAG TTGCATTCACATAAATCGGGATGCCAAATTCAAGAAGCAATGGAAGACGAAGCTGATCATATGAAGTCAGAAGGAAGTGATTTTTTCAAGCATTATTTTG GCAGTTTATCAACCGCATGCAAGGTGGACGGAAGTAACCCTTTTGTTCGAAGAAGGTACTCTGCAAAATATGTGGTGCGCCAGGACTATGCTGGAGGAGG CAAGAGCCTGTTTGACACACCTGTTCAAAATCTTCACAGTAAAATCTCGACCTACAAGGCAGAATCTGTCCCGCATATTACCTTGGAGGATCCAATGACC CAGAATCCGGAAGAACAGAAAGAGAGAGAATCTTCTAAACAGGACCTAAAGAACTCAACACAGGGCTTGCTGATCTCAACTCATGCTCTCTCACAAGGTG AATTGACTAACTGCGATCTCGCAGAAGATTCTTTAAACATGAAATTAACAGAGGCCATGGATCAAAAGGAACGCACTCCTGAAACTGAAGGAAACGATCT GCAGCAAAGACTAACTGCATGCTGGGAAGCACTAATAAATTTGGACAATGCAGCTGACAATGCAGTCCATTTATTTTCAGAATTAGGAACTATGGTCTCC ACAGAAGAAATATCAAACAGTCCTGGAGCTAAGTTATATGGCGACGCAGGTAAGCTACTTCCATCAATCGCCAATAAGCTCAATGCAATTGCTGAACTGG TGCAATGTAGGAGCCACATTTCATGCAAGAGTAGGGTTGAAGTTTCAGGACTGGAACCTTTGTTAGGAACATTTGCTGAGAGTCTATCCGAAAGGGTAGT CGAGATACTGAAGAAGAACCTAACCAAGAGCAAGGATTAA
AA sequence Show only first row Show all	>Potri.006G096400.10 pacid=42768325 polypeptide=Potri.006G096400.10.p locus=Potri.006G096400 ID=Potri.006G096400.10.v4.1 annot-version=v4.1 MKINNRKLKKSETSSSSKLVLEEIIGLTTKNANGLASNTSTARFAYIAGCVVVVYNVDSTTQSHLLVSHRPPKPLTCVAMSRDGRFIAAGESGNQPAVLV WDCSTMSFVSELKGHLYGVECIAFSPNGEHVVSVGGYIYLWDWRSGILVTKLKASSSCSAVTSVSFSSDAKFIVTAGKKHLKFWTVGSSPGTRLSNGTGS LAMHGKPVNLGPQKGSSFISVTSAIGMNNSPDTPEQAGDLFPIYVLTDEGTLCLVDSGLSVRKTVDLKVEQGYALSASDKLIACACCNGIVKLFTSETLN HAGTLLYSNAKSFQGDTNFHFQTTEVQKDSQLVPALPDAIACQFSTSEKLVVVYGDHTLYIWNIHDMKEATRCYALVSHSACIWDVKNLCCENMHDPSLA CVARGCSGGVSFATCSADGTIRLWDLTLQSNLVEDDADQQSLKAKQMGGTRLVSSGILERDTAEAGVDTQGFRSMAASSDGKYLVAGDCEGNLHIYNLLT SDYACFQGIHDAEILSLSFSLSSKKHVISGDVVDSNCFLASGGRDRIIHLYDVERNFDLIGSIDDHSAAVTSVKLTFHGHKILSCSADRSLVFRDVCVVE SCCKISRRHHQMASHGTVYDMALDPAMEFVVTVGQDKKINTFDIASGKLTRSFKQDKDFGDPIKVSMDPSCSYLACSYSNKSLCMYDAISGELVTRAVGH GEVITGVIFLPDCKHVVSVGGDSCIFVWKLPSRMSSRMLQRMKENAVPLSPKDLGPPSAFNQIVFSEAEDQQCTYNAEKILLPENSNQFGEKKFYQGERS PRISMFRFSVSRLPRWAQAKVEGSNSVSKNPDITSFQQPELKTCPPDVDGGECGALCPEVQSPLGTVVGSRDSYISSLSGSSASENNQSSPTPLDTRSCF AMDKRWLNVYTVCLDPLNSPEMPHLADPNMLVASPNSKIPSNGECSSAQANLAVKEERKASSKRHACSNNYGFLGKSENLSGIHSTSKCHKAVAGHVTEQ LHSHKSGCQIQEAMEDEADHMKSEGSDFFKHYFGSLSTACKVDGSNPFVRRRYSAKYVVRQDYAGGGKSLFDTPVQNLHSKISTYKAESVPHITLEDPMT QNPEEQKERESSKQDLKNSTQGLLISTHALSQGELTNCDLAEDSLNMKLTEAMDQKERTPETEGNDLQQRLTACWEALINLDNAADNAVHLFSELGTMVS TEEISNSPGAKLYGDAGKLLPSIANKLNAIAELVQCRSHISCKSRVEVSGLEPLLGTFAESLSERVVEILKKNLTKSKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	0	1
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	2.44	0.9347
AT4G14970			unknown protein		Potri.006G023500 [exp]	2.82	0.9261
AT4G01730			DHHC-type zinc finger family p...		Potri.002G186800 [exp]	4.47	0.9188
AT3G53320			unknown protein		Potri.016G085600 [exp]	5.00	0.9260
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	5.47	0.9310	Pt-CDC20.3
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Potri.014G084200 [exp]	5.65	0.9220
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	5.74	0.9266
AT2G23530			Zinc-finger domain of monoamin...		Potri.007G036200 [exp]	6.63	0.9173
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	6.70	0.9205
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	8.77	0.9233	Pt-SOM1.1,CHR905

Compare expression of checked genes

Potri.006G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.