Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09070 283 / 3e-85 Protein of unknown function (DUF740) (.1) AT2G38070 258 / 1e-76 Protein of unknown function (DUF740) (.1) AT5G01170 210 / 2e-59 Protein of unknown function (DUF740) (.1) AT5G58930 171 / 9e-46 Protein of unknown function (DUF740) (.1) AT3G46990 146 / 5e-37 Protein of unknown function (DUF740) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111400 [exp] 987 / 0 AT3G09070 291 / 2e-88 Protein of unknown function (DUF740) (.1) Potri.001G248400 [exp] 307 / 1e-95 AT5G58930 287 / 4e-90 Protein of unknown function (DUF740) (.1) Potri.009G042200 [exp] 298 / 2e-92 AT5G58930 268 / 5e-83 Protein of unknown function (DUF740) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035513 [exp] 500 / 3e-168 AT3G09070 465 / 8e-155 Protein of unknown function (DUF740) (.1) Lus10027785 [exp] 392 / 2e-127 AT3G09070 385 / 7e-125 Protein of unknown function (DUF740) (.1) Lus10018206 [exp] 182 / 5e-49 AT5G58930 234 / 6e-70 Protein of unknown function (DUF740) (.1) Lus10040700 [exp] 176 / 1e-47 AT5G58930 221 / 2e-65 Protein of unknown function (DUF740) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [poplar] [flax] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Potri.006G096600.3 pacid=42768586 polypeptide=Potri.006G096600.3.p locus=Potri.006G096600 ID=Potri.006G096600.3.v4.1 annot-version=v4.1 ATGAATCCCACCACTGAACCACCACAACTTCAGCCACCCCAACCACCGCAACCCCACCGTCATTCCACTTCTTGTGACCGTCACCCAGAAGAACATTTCA CTGGTTTTTGCCCTTCATGCCTCTGCGAGCGTCTTGCCGTGCTCGATCCCAACACCTCCTCCGCCGCTTCTTCTTCCTCTTCCCGCAAACCCACTGCCAC CGCCGCCCTTAAAGCCATCTTCAAGCCTTCTCAACTGTCTAGCTCCAGTAATAATAATAATAATAATAATAATAACAATAACAAGTCGTCTTCATTTTTT CCTGAGCTCCGCCGTACTAAATCCTTTTCTGCCTCTAAAAACGAAGGGTTTTCCGGGGTTTTTGAGCCTCAAAGAAAATCTTGTGACGTTCGAGAGAGAT ATACTCTTTGGTCTCTCTTCACTCAGGACGACGAGAGAAACCCATCTGTTAAAAAAGAGCCCTTTAAAGGAGGACCTGAAATTGAGGCTGTTGAGCCCAG AATTTCTTGTTCTAGTGTTCGAGGTCCGGTTTTTGAGTCCAAAGAAGAAGAAGAAATCGAAAGCGAAACCGACACTGAAAATGAGAATGCGAATACCAGC GTCAATGCTAATATTGGTGGAGATATTTTGGTTAATGGGGTTTTAGAGGAGTCTAATTTGACTGCGAGAAATTCGAATGCAAACCCAATTGATGAAATTA TAGAGGAAGAGGAAGACGAAGACGAAGACGAGGACGAAGAAGAAGGGATTATTATAGAGCCAGAGCCAGTTCACGAAACAGTTTTGGAGGAGCTTAAGAC TATGAAGGACCATATAGATCTTGATTCGCAGTCTAAAAAAACCTCAGGGAGGGACTTGAAAGAGATTGCTGGTAGTTTCTGGTCTGCTGCTTCGGTTTTC AGCAAGAAATTGCAGAAATGGAGGCAAAAGCAGAAGCTTAAGAAGCAGAGAAATGGCGGTCCTGGTTCAGCTACGTTGCCTGTAGAAAAGCCAATTGGGA GGCAGTATAGGGAGACTCAGTCGGAGATTGCTGATTATGGGTTTGGTAGAAGGTCTTGTGACACGGATCCGAGGTTCTCTCTTGATGCTGGGAGGATTTC TTTTGATGATCCTAGGTATTCTTTCGACGAGCCTCGTGCTTCTTGGGATGGATATCTGATTGGAAGGACATTTCCAAGAATGCCTACAATGGTATCTGTC GTTGAGGATGCTCCTGTTAATGTTGTTAATGTTGTTTCAAGGTCTGATACTCAAATCCCAGTTGAGGAACCGCCGCGAATATCTATGAATTCAATCAATG AAGATGATGAAGATGAGACTGTCCCTGGTGGGTCTGTCCAAACTAGGGATTATTACTCTGATTCTTCATCGAGGAGGAGGAAGAGTCTTGACAGGTCTAA TTCTATTAGGAAGACTGCTGCGGCTGTGGTGGCTGAGATTGATGAGTTGAAGGCTGTTTCCAATGCTAAAGTGACCCCAGCAACTGTGGATTATATCCAT GGACCTAAGCTGGTGGTTCCTGATAGGGATTTTAGGGATTCGAACTCGAATTCTTTGAGGGATGATTGCTCTGAGAATTTTGACATGGGGTTCAGAGACA ATGCATCTGTCGTGGGGAATGGTGAAAGGAAAGGGGTCAAGAAACCTCGGAGATGGAGCAAGGCGTGGAGTATTTGGGGTTTTATACACAGAAGAAGTGT TAACAAAGATGAGGATGAGGATAGGTATAGCAGAGCAAATGGGGTAGAGAGGTCCTTTTCAGAGTCTTGGCCAGAATTGAGAGGGGAACGAAATGGAGAT GTAAGGGGGGGTTTTAATCCGAAGATGTTGAGGAGCAACAGCAGTGTTAGTTGGAGAAATTCACATAATTTTGGCGGTGGATCTTTTAGCAGTGCAAGGA AGAGCAGTGTTGAGACTAATGGGAATGGGAGAAAGAAGAGGGATGAGTTTGTGTTGGAGAGGAACAGGAGTGCAAGGTATTCACCAAACAACATGGATAA TGGACTGTTAAGGTTCTACCTGACGCCGTTGAGGAACAGTCGTCGAAATGGTTGGGGGAAGAGTAAGTCCAGTCATGCACAATCCATTGCAAGGAGCGTA TTGCGATTATACTGA
AA sequence Show only first row Show all	>Potri.006G096600.3 pacid=42768586 polypeptide=Potri.006G096600.3.p locus=Potri.006G096600 ID=Potri.006G096600.3.v4.1 annot-version=v4.1 MNPTTEPPQLQPPQPPQPHRHSTSCDRHPEEHFTGFCPSCLCERLAVLDPNTSSAASSSSSRKPTATAALKAIFKPSQLSSSSNNNNNNNNNNNKSSSFF PELRRTKSFSASKNEGFSGVFEPQRKSCDVRERYTLWSLFTQDDERNPSVKKEPFKGGPEIEAVEPRISCSSVRGPVFESKEEEEIESETDTENENANTS VNANIGGDILVNGVLEESNLTARNSNANPIDEIIEEEEDEDEDEDEEEGIIIEPEPVHETVLEELKTMKDHIDLDSQSKKTSGRDLKEIAGSFWSAASVF SKKLQKWRQKQKLKKQRNGGPGSATLPVEKPIGRQYRETQSEIADYGFGRRSCDTDPRFSLDAGRISFDDPRYSFDEPRASWDGYLIGRTFPRMPTMVSV VEDAPVNVVNVVSRSDTQIPVEEPPRISMNSINEDDEDETVPGGSVQTRDYYSDSSSRRRKSLDRSNSIRKTAAAVVAEIDELKAVSNAKVTPATVDYIH GPKLVVPDRDFRDSNSNSLRDDCSENFDMGFRDNASVVGNGERKGVKKPRRWSKAWSIWGFIHRRSVNKDEDEDRYSRANGVERSFSESWPELRGERNGD VRGGFNPKMLRSNSSVSWRNSHNFGGGSFSSARKSSVETNGNGRKKRDEFVLERNRSARYSPNNMDNGLLRFYLTPLRNSRRNGWGKSKSSHAQSIARSV LRLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	0	1
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.010G040200 [exp]	1.00	0.8710
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	2.23	0.8384
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.012G126000 [exp]	2.44	0.8423	CBP.2
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	3.46	0.8483
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	7.21	0.8421
AT3G11590			unknown protein		Potri.006G207800 [exp]	9.94	0.8250
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	12.40	0.8040
AT4G39790			Protein of unknown function (D...		Potri.005G077700 [exp]	12.96	0.7469
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	13.78	0.8082
AT1G62870			unknown protein		Potri.003G115900 [exp]	16.43	0.7643

Compare expression of checked genes

Potri.006G096600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.