Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 896 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 855 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 689 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 646 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 570 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G68570 458 / 1e-155 Major facilitator superfamily protein (.1) AT5G46050 450 / 1e-152 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT2G40460 449 / 3e-152 Major facilitator superfamily protein (.1) AT4G21680 439 / 3e-148 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G46040 438 / 9e-148 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111800 [exp] 1033 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 822 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 822 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 801 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 700 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 645 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 518 / 8e-179 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G258900 [exp] 502 / 1e-172 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.005G233500 [exp] 502 / 2e-172 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035516 [exp] 907 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 786 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 766 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10030947 [exp] 695 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 692 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 683 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040698 [exp] 679 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10000670 [exp] 673 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 648 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 511 / 3e-176 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.006G096800.1 pacid=42767827 polypeptide=Potri.006G096800.1.p locus=Potri.006G096800 ID=Potri.006G096800.1.v4.1 annot-version=v4.1 ATGGCACAAGACGATTACTCAAACGATGGGACGGTGGATATCAAAGGAAATCCAGCAAATAAAAAGAAAACCGGAAACTGGAAGGCTGGCCGCTTTATTC TTGGAAATGAATGCTGTGAGAGGTTGGCATACTATGGGATGAGTACCAATCTAGTGAATTATCTTGAGGACCGTCTCAACCAGGGAAATGTCGCTGCATC AAACAATGTTACCAATTGGTCTGGAACTTGCTATATCACACCACTGATTGGAGCTTTTCTAGCCGATTCATATTTGGGAAGGTATTGGACAATTGCGAGT TTTGTTGTCATCTATATCATTGGAATGACACTCTTAACATTGTCTGCTTCAGTCCCTGGGTTAGAGTCATCATGTGACAAGGATTCTTGCCACCCGACCA CAGGACAAACCACAGCATTCTTTGTAGCACTTTACTTTATTGCTCTTGGAACTGGAGGAATCAAACCATGTGTTTCATCTTTTGGAGCCGATCAATTTGA TGAAACAGATGAGACAGAGAGGAAAAAGAAGAGCTCCTTTTTTAATTGGTTTTACCTTTCAATCAACATAGGTGCGCTTATTGCATCTTCTGTTTTGGTC TGGATACAAATGAATGTTGGTTGGGGGTGGGGATTTGGAATCCCTGCAGTTGCGATGGCTGTAGCAGTTGTGTTTTTCTTCTTGGGAAGTAAGCTATACC GAATTCAAAAACCTGGTGGGAGTCCCATTACAAGGATTGTCCAGGTTATAGTTGCATCCTTCAGAAAGTACCATGTTCAAGTTCCTGCTGATAAATCTCT TCTTTATGAGACTGCAGAAGAGGAAAGTCAAATCCAAGGAAGTCGTAAGCTCGAACACACGGATAAATTCAAGTTCTTTGACAAGGCTGCTGTGGAAACC CAAACTGACAATATCAAGGACTTAACAAACCCATGGAGACTCTGCACAGTAACCCAAGTTGAAGAGCTCAAGTCCATTGTCAGGTTGCTCCCAGTATGGG CATCTGGAATAGTCTTTGCAACTGTATACAGTCAAATGAGCATCATGTTCGTTTTGCAAGGAAATACTATGGACCAACATATGGGTCCCCATTTCAAGAT TCCATCAGCATCGCTCTCCCTCTTTGGTTACCTCAGTGTCATCTTCTGGGCTCCTGTATATGATCGTATCATTGTCCCATACGCAAGGAAGTTCACGGGT CATGAACGAGGCTTTACTCAGCTCCAACGTATGGGCATTGGCCTCGTCATATCAATTGTCTCCATGATCGTTGCTGGGGTATTGGAGGTTGTTCGACTCA ACTTTGTCCGAGAGAACAATTACTATGATCTTGAGTACATCCCAATGACCATTTTCTGGCAAGTACCGCAGTACTTTCTCATAGGATGTGCAGAAGTTTT TACCTTCATTGGACAGTTGGAGTTTTTCTATGACCAGGCACCTGATGCTATGAGAAGTTTGTGCTCAGCTCTCTCTCTTACTACCGTCGCATTAGGAAAT TACCTGAGCACTCTGCTTGTTACCATTGTAACTAAAGTTACAACGAGAGGTGGGAAGCTTGGTTGGATCCCTGATAATTTGAATAGGGGCCATCTTGATT ACTTCTACTGGCTCTTGGCAATTCTCAGCTTCCTGAACTTCACTGCGTATCTCTGGATTTCAAAGTGGTATGCCTACAAGAAAGCTACAGAGCGTCCTCA TTGA
AA sequence Show only first row Show all	>Potri.006G096800.1 pacid=42767827 polypeptide=Potri.006G096800.1.p locus=Potri.006G096800 ID=Potri.006G096800.1.v4.1 annot-version=v4.1 MAQDDYSNDGTVDIKGNPANKKKTGNWKAGRFILGNECCERLAYYGMSTNLVNYLEDRLNQGNVAASNNVTNWSGTCYITPLIGAFLADSYLGRYWTIAS FVVIYIIGMTLLTLSASVPGLESSCDKDSCHPTTGQTTAFFVALYFIALGTGGIKPCVSSFGADQFDETDETERKKKSSFFNWFYLSINIGALIASSVLV WIQMNVGWGWGFGIPAVAMAVAVVFFFLGSKLYRIQKPGGSPITRIVQVIVASFRKYHVQVPADKSLLYETAEEESQIQGSRKLEHTDKFKFFDKAAVET QTDNIKDLTNPWRLCTVTQVEELKSIVRLLPVWASGIVFATVYSQMSIMFVLQGNTMDQHMGPHFKIPSASLSLFGYLSVIFWAPVYDRIIVPYARKFTG HERGFTQLQRMGIGLVISIVSMIVAGVLEVVRLNFVRENNYYDLEYIPMTIFWQVPQYFLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGN YLSTLLVTIVTKVTTRGGKLGWIPDNLNRGHLDYFYWLLAILSFLNFTAYLWISKWYAYKKATERPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.006G096800 [exp]	0	1
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	1.41	0.9299
					Potri.003G038525 [exp]	3.00	0.9233
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.012G015100 [exp]	3.74	0.8950
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	4.24	0.9070
AT1G55160			unknown protein		Potri.001G200200 [exp]	6.92	0.9023
					Potri.006G056101 [exp]	10.72	0.9080
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	11.95	0.8988
					Potri.003G152500 [exp]	12.40	0.8890
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.001G050400 [exp]	16.30	0.9039
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.010G174400 [exp]	17.60	0.8605

Compare expression of checked genes

Potri.006G096800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.