Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60010 1078 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 1061 / 0 ferric reductase-like transmembrane component family protein (.1) AT1G64060 788 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT5G51060 758 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT1G09090 747 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT5G47910 734 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G07390 720 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 702 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G19230 699 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT4G11230 686 / 0 Riboflavin synthase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112200 [exp] 1485 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.001G098300 [exp] 796 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.003G133300 [exp] 794 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.005G026200 [exp] 780 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.012G111600 [exp] 777 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 766 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.015G109800 [exp] 757 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.001G070900 [exp] 743 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.006G137300 [exp] 743 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019390 [exp] 1026 / 0 AT5G60010 995 / 0.0 ferric reductase-like transmembrane component family protein (.1) Lus10043017 [exp] 796 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 794 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032308 [exp] 790 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10029896 [exp] 789 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10022434 [exp] 777 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10028755 [exp] 777 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 775 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 749 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10020644 [exp] 734 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF01794 [poplar] [flax] Ferric_reduct Ferric reductase like transmembrane component CL0076 [poplar] [flax] FAD_Lum_binding PF08022 [poplar] [flax] FAD_binding_8 FAD-binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF08030 [poplar] [flax] NAD_binding_6 Ferric reductase NAD binding domain CL0220 [poplar] [flax] EF_hand PF08414 [poplar] [flax] NADPH_Ox Respiratory burst NADPH oxidase
Representative CDS sequence Show only first row Show all	>Potri.006G097200.1 pacid=42767680 polypeptide=Potri.006G097200.1.p locus=Potri.006G097200 ID=Potri.006G097200.1.v4.1 annot-version=v4.1 ATGGGTAGCAGAACAGAATCAAAAAAGTGGATGCTCGAAAACATTGAAATTGATAGGATGGTGGAAGTTCCTATCAATGATGAACCAAAAAAAGCCTTTC CACCCAGAGGACCTGTTGGCGCATCTATCAAGTGGAGTGCAAGTAATCTTGGGGCATCCCTCAGAAGGACTACAAGCAGTGCCTTGAGGAAGAATGGTGT TCTCTCTTCGAAACCTCCTCGCCCCAAGATGGAAAGGACAGCATCATCTGCTGCAAGAGGGCTTAAAAGCCTAAGGTTTCTTGATAGAACAGTGACAGGA AAGGAAATGGATGCATGGAGATCAATCGAAAGGCGCTTTGATCAATTTGCAGTTGATGAAAGGCTCCCAAAGGACAAATTTGGAATCTGCATTGGACTAG GAGATTCAAAAGAGTTTGCTGGAGAAATATTTGACGCAATTGCTAGGCGTAAGAATATATTCACCGCAAATGGGATCACAAAAGATGAGTTGAAATTGTT TTGGGAAGACATGACTAAACAAGATCTTGATTCTCGACTTGGAATATTTTTTGATATGTGCGACAAGAATGGCGATGGGAGGCTATCGGAGGAGGAAGTG AAGGAGATTATAGTGTTAAGTGCCTCCGCAAACAAGCTCACAAATCTTAAACAGTACGCGGCAGTCTATGCAGCTCTAATCATGGAAGAGCTTGATCCTG ATCATCTTGGATATATAGGGCTATGGCAGCTAGAAACTCTACTAAGAGAGATGGCGAATAATGAAGATCAAATTACCACGAAGCTCAATAGAAGCACACA TACTCTCACAAGAGCCATGATCCCAAGAAGATATCGGACTCCTGTTACCAAATCATTGTCGCTGTCAGTAGAATATATTCATGAGAATTGGAGGAGAATA TGGGTTATGACGTTATGGTTAGCTGTAAACTTGGCACTTTTTATTTGGAAGTTTAAGGAATTCGAGAAATCACCCCTATTCAAAATCTCAAGTTATTGTG TCTGTCTTGCCAAGGCTTCCGCGGAGACTCTCAAGTTGAATATGGCTCTCATTCTTCTTCCTGTTTGCAGAAGAACACTCACTAAGCTTAGATCGTCATT TCTCGGCACCTTTATCCCTTTTGATGACAACATAAACTTTCACAAAAACATTGCTTTGGCCATAGTAATTGCGACTGTAGCTCATACTCTAGCACATATG CTTTGTAATATTCCGTTGTTGAGTTCATGCCCAAAAGACAAATTCATGGCATATGCTGGACCATTGTTCAATTACCAACAGCCAACTTATTGGTTCTTCA TACGAAGTAGTGTAGGCGTCACCGGAATTCTGATTATCCTTGTAATGGGGTTCTCATTTACATTGGCAACACACTATTTCCGAAAGAATGTCGTTAAGTT ACCAGGGGCGTTTCACAAATTGGCAGGGTTTAATGCTTTCTGGTATGCGCATCAGTTGCTGGCCTTGGCATACCTGCTATGTTTTTTGCATGGCTACTTC TTAATCTTTGAAAAACCTTGGTATGCCAAAACGACATGGATGTATCTCATTGGCCCAGTAGTATTCTACGCCACAGAGAGAATCTCTACAAAATATCAGG AACACCATCACCAGGTTGATGTCATTAAGGCAATTATATATACAGGGAATGTTCTTGCTCTATACATGAACAAGCCTCCAGGATTTAAGTACGAAAGTGG AATGTACCTCTTCATCAAGAGCCCGGATTTGTCAAGTTTTGAATGGCATCCCTTCTCCATCACTTCTGCACCAGGAGATAACAATTTGAGTGTCCACATA CGAACCGTGGGTGATTGGACTTCGGAACTCAAAAACTTATTTGCAAAGGTCTGTGAGGCCCCACCTGCTGCGAAACAAAAACAAGGCAGGCTAAATAGAT TGGAAACAATAGCAATGTCAAACTCGAATTATGATCAGATACAAGCAACATTCCCAAAGATCCTGATCAAAGGACCTTTCGGAGCCCCAGCTCAGAATTA CAAGAAGTTCGACATCCTATTGCTCATAGGTCTAGGAATCGGAGCAACTCCCTTTATCAGCATTTTGAAGGATCTCCTTAATGGCATCAAACCAAGTGCA GCCGATTCGATGAAGGACCGACGATGTACAGAAAGAGCATACTTTTACTGGGTCACAAGAGAACAAAGCTCTTTTGATTGGTTTAAGGGTGTCATGGACG ATGTTGCAGACTATGATGATAATCATATAATAGAAATGCACAACTACTTGACTAGTGTGTATGAAGAAGGAGATGCAAGGTCTGCACTTATTGCCATGGT ACAAAAACTGCAGCATGCAAAGAATGGACTTGATGTTGTCTCCCAAAGCCGGATAAGAACGCATTTTGCAAGGCCCAACTGGAGAAAGGTGTTCGCTCAA ATGGCAGAAACGCACAAGTCTTCTCGGATAGGTGTCTTCTACTGTGGAAGCGCTCTGCTTGTCAAAACACTGAGAGAGCTTTGCCAAGAATTTACTCTAG ATTCATCAACCCGTTTCCAATTTCATAAGGAGAACTTCTGA
AA sequence Show only first row Show all	>Potri.006G097200.1 pacid=42767680 polypeptide=Potri.006G097200.1.p locus=Potri.006G097200 ID=Potri.006G097200.1.v4.1 annot-version=v4.1 MGSRTESKKWMLENIEIDRMVEVPINDEPKKAFPPRGPVGASIKWSASNLGASLRRTTSSALRKNGVLSSKPPRPKMERTASSAARGLKSLRFLDRTVTG KEMDAWRSIERRFDQFAVDERLPKDKFGICIGLGDSKEFAGEIFDAIARRKNIFTANGITKDELKLFWEDMTKQDLDSRLGIFFDMCDKNGDGRLSEEEV KEIIVLSASANKLTNLKQYAAVYAALIMEELDPDHLGYIGLWQLETLLREMANNEDQITTKLNRSTHTLTRAMIPRRYRTPVTKSLSLSVEYIHENWRRI WVMTLWLAVNLALFIWKFKEFEKSPLFKISSYCVCLAKASAETLKLNMALILLPVCRRTLTKLRSSFLGTFIPFDDNINFHKNIALAIVIATVAHTLAHM LCNIPLLSSCPKDKFMAYAGPLFNYQQPTYWFFIRSSVGVTGILIILVMGFSFTLATHYFRKNVVKLPGAFHKLAGFNAFWYAHQLLALAYLLCFLHGYF LIFEKPWYAKTTWMYLIGPVVFYATERISTKYQEHHHQVDVIKAIIYTGNVLALYMNKPPGFKYESGMYLFIKSPDLSSFEWHPFSITSAPGDNNLSVHI RTVGDWTSELKNLFAKVCEAPPAAKQKQGRLNRLETIAMSNSNYDQIQATFPKILIKGPFGAPAQNYKKFDILLLIGLGIGATPFISILKDLLNGIKPSA ADSMKDRRCTERAYFYWVTREQSSFDWFKGVMDDVADYDDNHIIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGLDVVSQSRIRTHFARPNWRKVFAQ MAETHKSSRIGVFYCGSALLVKTLRELCQEFTLDSSTRFQFHKENF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60010			ferric reductase-like transmem...		Potri.006G097200 [exp]	0	1
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.010G009400 [exp]	2.23	0.8969
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	6.32	0.8766
					Potri.014G182232 [exp]	6.92	0.8717
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	10.48	0.8674
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.006G028300 [exp]	10.72	0.8553
AT4G22560			unknown protein		Potri.001G121600 [exp]	12.64	0.8687
AT5G25240			unknown protein		Potri.006G259300 [exp]	12.84	0.8740
AT1G11330			S-locus lectin protein kinase ...		Potri.005G014802 [exp]	17.74	0.8689
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	22.29	0.8722
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032400 [exp]	22.91	0.8427

Compare expression of checked genes

Potri.006G097200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.