Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01210 633 / 0 HXXXD-type acyl-transferase family protein (.1) AT2G39980 591 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G42830 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) AT5G07850 266 / 4e-84 HXXXD-type acyl-transferase family protein (.1) AT5G07860 264 / 3e-83 HXXXD-type acyl-transferase family protein (.1) AT5G07870 261 / 6e-82 HXXXD-type acyl-transferase family protein (.1) AT5G23940 240 / 1e-73 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G67150 234 / 9e-72 HXXXD-type acyl-transferase family protein (.1) AT3G50270 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) AT3G50300 214 / 4e-64 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112400 [exp] 865 / 0 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 630 / 0 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 619 / 0 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 327 / 1e-107 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 319 / 2e-104 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 313 / 3e-102 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 281 / 6e-90 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 276 / 3e-88 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 275 / 1e-87 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035519 [exp] 547 / 0 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 545 / 0 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 535 / 0 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 412 / 6e-143 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 258 / 1e-80 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 239 / 3e-73 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 237 / 1e-72 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 235 / 7e-72 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 234 / 2e-71 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 222 / 1e-66 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.006G097500.1 pacid=42770162 polypeptide=Potri.006G097500.1.p locus=Potri.006G097500 ID=Potri.006G097500.1.v4.1 annot-version=v4.1 ATGCCTTCTTCCAATACCACCATCGTCTCAAGATGCACAATCCACCCTGACCAAAAATCCACCACCATCGAAACCCTAAAGCTCTCAGTCTCTGACCTCC CCATGCTCTCGTGCCAATACATCCAGAAGGGTGTCCTCCTCCCTTATCCACCATACTCCATTGATGACCTCATCACATTCCTCAAACACTCCCTCTCCAC CGCTCTTTCTCACTTCCCTGCTCTTGCTGGCCGCCTCCAAACTGACCCTACCGGCCATATCCATATTGTATGCAACGATGCAGGCGTTGATTTCATCCAA GCCAAAGCAAGACACCTCTCTATCCACACCATTCTTTCTCCAACCGACGTCCCTGAATGCTTCAAAGGGTTCTTCGCATTCGACAAGACCCTCAGTTATT CGGGTCATTCAAAACCATTAATGGCAGTTCAGGTCACTGAACTGCAAGACGGCATATTCATTGGCTGCTCGGTAAACCATGCTGTCACTGATGGCACTTC ATTCTGGCACTTTTTCAATACCTTCGCTGAAATATGCAAGGGATCTAAAAAAATTTCTAATTCACCAGACTTTTCCCGCAACACCTTGTTTAACTCACCG GCGGTGCTTAAATTCCCCGCCGGTGGGCCGAAAGTGACATTTTCTGGTGATGAGCCATTGCGCGAGAGAGTTTTCCATTTTAGAAGAGAAGCAATTCTCA AGCTCAAATTCAGAGCTAATAACAGTGATTTAATTTGCAATTCGGCGGAGATTTTCGGAAAGCAAAGAAACGACAGTTGGAAAGCCGCTAACGGAGAAAG TAACGGGAAAGTAGCTCCCCTTTTCTTAATGAAGGGCAAAACTGCGGAGATTTCCTCGTTTCAGTCCCTTTGCGCGCAGCTATGGAGATCAGTGACACGT GCGAGGAAACTAATGCCGTCTAAGATGACGACGTTTCGTATGGCAGTGAATTGCCGGCACCGGCTGGAGCCACGGCTGGAGCCGTATTACTTTGGCAACG CGATTCAAAGCATCCCAACGGCTGCTTCGGCTGGAGAGCTTTTATCAAAGGACCTGAGCTTCGGAGCTGAATTGCTGCACAGAAACGTCGTCGCACATGG TGATGGTACGGTGCGGAAGGGTATATCAGACTGGGAAAAGGAGCCGCGGTTATTTCCGTTGGGGAATTTTGATGGAGCATCAATCACGATGGGGAGTTCT CCAAGATTTCCAATGTATGATAATGATTTTGGGTGGGGCCGACCTTTGGCAGTGAGGAGTGGTAGGGCCAATAAATTTGATGGGAAGATATCAGCTTTTC CAGGGGGAGATGGAAAGGGGAGCGTTGATCTTGAGGTGGTTTTGTCACCTGATACAATGATTGGGCTTGAAAACGATGGTGAGTTTATGCAATATGTTTC AGAAATCTCTGGTTGTACACCAACACCATAG
AA sequence Show only first row Show all	>Potri.006G097500.1 pacid=42770162 polypeptide=Potri.006G097500.1.p locus=Potri.006G097500 ID=Potri.006G097500.1.v4.1 annot-version=v4.1 MPSSNTTIVSRCTIHPDQKSTTIETLKLSVSDLPMLSCQYIQKGVLLPYPPYSIDDLITFLKHSLSTALSHFPALAGRLQTDPTGHIHIVCNDAGVDFIQ AKARHLSIHTILSPTDVPECFKGFFAFDKTLSYSGHSKPLMAVQVTELQDGIFIGCSVNHAVTDGTSFWHFFNTFAEICKGSKKISNSPDFSRNTLFNSP AVLKFPAGGPKVTFSGDEPLRERVFHFRREAILKLKFRANNSDLICNSAEIFGKQRNDSWKAANGESNGKVAPLFLMKGKTAEISSFQSLCAQLWRSVTR ARKLMPSKMTTFRMAVNCRHRLEPRLEPYYFGNAIQSIPTAASAGELLSKDLSFGAELLHRNVVAHGDGTVRKGISDWEKEPRLFPLGNFDGASITMGSS PRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGGDGKGSVDLEVVLSPDTMIGLENDGEFMQYVSEISGCTPTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.006G097500 [exp]	0	1
AT2G01300			unknown protein		Potri.010G115100 [exp]	1.00	0.9061
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.010G055200 [exp]	4.89	0.8518
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	6.48	0.8006
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	8.77	0.8561
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.009G081800 [exp]	9.48	0.8798
AT4G39830			Cupredoxin superfamily protein...		Potri.010G171700 [exp]	10.95	0.7968
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.016G112400 [exp]	11.13	0.8809
AT2G30020			Protein phosphatase 2C family ...		Potri.010G187000 [exp]	15.49	0.7697
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.001G384200 [exp]	16.24	0.8678
AT5G03820			GDSL-like Lipase/Acylhydrolase...		Potri.006G118300 [exp]	25.69	0.8123

Compare expression of checked genes

Potri.006G097500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.