Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01220 751 / 0 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT3G45100 56 / 6e-08 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G73370 52 / 7e-07 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT3G01180 50 / 5e-06 ATSS2 starch synthase 2 (.1) AT4G18240 49 / 7e-06 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G32900 48 / 2e-05 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G10120 47 / 4e-05 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G20830 46 / 7e-05 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G78800 45 / 7e-05 UDP-Glycosyltransferase superfamily protein (.1) AT3G15940 45 / 0.0001 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112600 [exp] 824 / 0 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G130000 [exp] 60 / 2e-09 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.012G037200 [exp] 55 / 9e-08 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 55 / 9e-08 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G084100 [exp] 50 / 3e-06 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.004G081300 [exp] 50 / 3e-06 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.001G179000 [exp] 50 / 5e-06 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G351800 [exp] 49 / 8e-06 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.017G139100 [exp] 47 / 3e-05 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002499 [exp] 768 / 0 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10004832 [exp] 673 / 0 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10024892 [exp] 58 / 1e-08 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018116 [exp] 57 / 2e-08 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022925 [exp] 55 / 7e-08 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022398 [exp] 56 / 8e-08 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10011469 [exp] 52 / 8e-07 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033014 [exp] 51 / 3e-06 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 50 / 3e-06 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10017984 [exp] 50 / 4e-06 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF13579 [poplar] [flax] Glyco_trans_4_4 Glycosyl transferase 4-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G097600.1 pacid=42766934 polypeptide=Potri.006G097600.1.p locus=Potri.006G097600 ID=Potri.006G097600.1.v4.1 annot-version=v4.1 ATGATACCTTCCACTTCTCTCTCCATAATTCCTACTCTCTCCCCTATTCCTTTCTATTCCATCACTTGTTCATCTTCTCCTTCAACATCCTCTTCTTCTT TCCTGTACCCGTTTCTGGTTTCTTTTAAAGTTTCGAACTTTTCTTCTCGTAAACCAAAACCCATTGATCTTTCTTGCAAACAAAACTGCTTTACTGAGTT TCAGAGGCTAAAAAAGGGTGAAAGAAATAAAGGGTGTTTTCTTGTTAGAGCTGAAAGCAATAACGATATGACTATTAGTGAGGTTAGAGAAGAAGACGAA GAGAACCCTCCTCCTTTCCTTGACTACGATACCATTTCAAGGCCTAGACGCATTGCTCTTTTTGTTGAGCCTTCTCCATTTGCATATGTATCAGGTTATA AAAACAGGTTCCAGAATTTCATCAAATATTTACGCGAAATGGGGGATGAGGTGATGGTTGTGACAACACATGAAGGAGTACCTCAGGAGTTTTATGGAGC AAAATTGATCGGATCACGGAGCTTCCCCTGCCCTTGGTATCAGAAGGTGCCCCTCTCTCTAGCACTTAGTCCAAGAATAATTTCAGAGGTTGCACGGTTT AAGCCTGACATAATACATGCATCATCACCTGGGATAATGGTTTTTGGTGCACTTGCCATTGCAAAACTGTTGTGTGTCCCCATAGTGATGTCTTATCACA CTCATGTCCCTGTATACATCCCAAGGTACACTTTTAGTTGGCTTGTGAAACCCATGTGGATGATCTTAAAATTTCTTCACAGAGCCGCTGATCTAACTCT AGTGCCATCAGCTGCTATTGGGAGGGATCTTGAAGCAGCTAGGGTGACAGCAGCTAATAAGATTCGTCTTTGGAATAAGGGTGTTGATTCTGAAAGTTTC CACCCCCGTTTCCGCTCTAATGAAATGCGAATGAGATTAAGCAATGGTGAGCCTGAAAAACCATTGATAGTCCATGTTGGACGGCTTGGAGTTGAGAAGA GTTTGGATTTTCTCAAAAGGGTCATGGATAGGCTTCCGGGAGCAAGGATTGCCTTTATTGGGGATGGACCATATAGGGAGGAGCTGGAAAAGATGTTTAC TGGCATCCCTGCTGTATTTACTGGGATGTTGGGAGGAGAAGAACTCTCTCAGGCATACGCCAGTGGGGATGTTTTTGTGATGCCTTCAGAATCCGAGACA CTTGGTCTTGTTGTTTTGGAGGCCATGTCATCAGGAATTCCTGTCGTGGCAGCTCGTGCTGGGGGGATACCAGATATAATTCCTCCAGAACAGGATGGCA AAACTGGGTTTCTCTTTAATCCAGGAGATCTTGATGACTGCTTGAGCAAGTTAGAGCCTTTGTTGGATAACCAAGAACTGAGAGAAACAATGGGCAAGGC AGCACGCCATGATATGGAGAAGTATGACTGGAAGGCAGCGACAAAGAAAATACGGAATGAACAATACAATGCTGCAATTTGGTTCTGGCGCAAGAAGAGA GCCCAGCTATTGAGACCTATCCAGTGGCTAGTAAAACGTCTCTTCCCATCTCCAGAAGTTTAA
AA sequence Show only first row Show all	>Potri.006G097600.1 pacid=42766934 polypeptide=Potri.006G097600.1.p locus=Potri.006G097600 ID=Potri.006G097600.1.v4.1 annot-version=v4.1 MIPSTSLSIIPTLSPIPFYSITCSSSPSTSSSSFLYPFLVSFKVSNFSSRKPKPIDLSCKQNCFTEFQRLKKGERNKGCFLVRAESNNDMTISEVREEDE ENPPPFLDYDTISRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARF KPDIIHASSPGIMVFGALAIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWMILKFLHRAADLTLVPSAAIGRDLEAARVTAANKIRLWNKGVDSESF HPRFRSNEMRMRLSNGEPEKPLIVHVGRLGVEKSLDFLKRVMDRLPGARIAFIGDGPYREELEKMFTGIPAVFTGMLGGEELSQAYASGDVFVMPSESET LGLVVLEAMSSGIPVVAARAGGIPDIIPPEQDGKTGFLFNPGDLDDCLSKLEPLLDNQELRETMGKAARHDMEKYDWKAATKKIRNEQYNAAIWFWRKKR AQLLRPIQWLVKRLFPSPEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Potri.006G097600 [exp]	0	1
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Potri.009G081200 [exp]	1.00	0.9012
AT2G26840			unknown protein		Potri.009G068300 [exp]	6.40	0.8234
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Potri.010G029100 [exp]	7.87	0.8855	NCPGS.7
AT5G37360			unknown protein		Potri.013G050300 [exp]	8.77	0.8431
AT4G36970			Remorin family protein (.1)		Potri.005G138500 [exp]	16.43	0.8012
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Potri.012G093800 [exp]	22.58	0.8693
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190900 [exp]	22.80	0.8399
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.002G195200 [exp]	23.74	0.8638	CLPP5.2
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	26.53	0.8110
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Potri.007G139700 [exp]	46.74	0.8095

Compare expression of checked genes

Potri.006G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.