Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 810 / 0 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G01610 626 / 0 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 614 / 0 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11430 473 / 8e-164 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 442 / 1e-151 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 416 / 3e-140 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G02390 328 / 1e-106 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT3G11325 315 / 1e-103 Phospholipid/glycerol acyltransferase family protein (.1) AT4G01950 313 / 3e-101 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113100 [exp] 943 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 645 / 0 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G063900 [exp] 605 / 0 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 595 / 0 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 474 / 2e-164 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.005G202200 [exp] 467 / 8e-161 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.008G058200 [exp] 464 / 1e-160 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.002G192600 [exp] 350 / 3e-115 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002500 [exp] 735 / 0 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 578 / 0 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 574 / 0 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004833 [exp] 550 / 0 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 441 / 3e-151 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10020767 [exp] 417 / 9e-142 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010934 [exp] 414 / 1e-139 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 402 / 5e-135 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10004835 [exp] 355 / 1e-121 AT2G38110 320 / 2e-108 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002501 [exp] 346 / 1e-115 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G097800.1 pacid=42769854 polypeptide=Potri.006G097800.1.p locus=Potri.006G097800 ID=Potri.006G097800.1.v4.1 annot-version=v4.1 ATGGTAATGGGGGCTCATCGCCATTTTGAACCAATAGCAAAATGTAGCACAGAGGGACGATCAAATCAGACTGTGGCTGCCGACCTGGATGGAACACTTC TTGTATCAAGAAGTGCTTTTCCATACTTCTTGCTTGTTGCTATTGAAGCTGGGAGTCTCTTAAGAGGACTAATTCTCTTAGCATCAGTCCCATTTGTATA CTTTACGTACTTATTTATATCAGAGGCAATGGCAATCAAGACTTTCATCTTCATTGCCTTTGCGGGACTTAAAATAAGAGACATTGAGCTTGTTTCAAGG TCTGTCTTGCCAAAGTTTTATGCTGATGATGTTCATCCAGAAACTTGGAGGGTGTTCAATTCTTTTGGAAAAAGATACATTGTTACTGCTAATCCTAGGA TTATGGTCGAGCCATTTGTCAAGACCTTTTTAGGGGCTGACAAGGTTCTTGGCACTGAATTAGAGGCTACAAAATCTGGAAGAGCAACTGGGTTTATCAA GAAACCTGGAGTTCTTGTTGGAGATCATAAAAGAGATGCTCTCTTAAAAGAGTTTGGCACAAATTTGCCTGATTTAGGCCTGGGAGACCGCGAAACTGAC CATGACTTCATGTCCATTTGCAAGGAAGGATATATGGTGCCAGGAACCAAGTGTGAGCCTCTAGCAAGAAACAAGCTTCTAAGCCCTGTCATATTCCACG ATGGCCGGTTAGTTCAAAGGCCTACTCCTTTGGCTGCCCTTTTGACCTTCTTATGGATGCCAATTGGTATTATTCTCTCCATACTTAGAGTCTACCTTAA CATCCCTTTGCCCGAGAGACTTGCCTGGTACACTTATAAGCTACTAGGAATTAGAGTTATTGTCAAGGGTACCCCTCCACCCCCTCCAGGAAAAGGCTAC AGTGGAGTCCTCTTTGTTTGCAATCATCGTACTGTCTTAGACCCAGTTGTCACTGCTGTTGCACTAGGAAGAAAAATTAGTTGTGTCACCTATAGCATAA GCAAGTTCACTGAAATTATTTCACCCATTAAAGCTGTTGCTTTATCAAGGGAGAGAGACAAAGATGCTGCTAACATTAAGCGACTGCTTGAAGAAGGTGA CCTGGTCATTTGCCCTGAAGGAACCACATGTAGAGAGCCATTTCTCTTGAGATTTAGTGCTCTTTTTGCTGAGCTTACTGATAGGATTGTGCCAGTTGCT ATCAATACAAAACAAAGTGTGTTTCATGGCACGACGGTTCGAGGGCACAAACTGTTGGACCCTTATTTTGTGTTCATGAATCCAATGCCAACATATGAGG TCACCTTCTTGAATCAGCTGCCCAAAGAGCTTACTTGCAAAGGAGGCAAATCAGCCATTGAAGTTGCAAATTACATACAAAGGGTGCTGGCTGGGACACT TGGATTTGAGTGCACTAACTTGACCAGGAAGGACAAGTATGCTAAGCTTGCAGGAACAGACGGCCGTGTTCTATCTAAGAAGGAAAATGCTTGA
AA sequence Show only first row Show all	>Potri.006G097800.1 pacid=42769854 polypeptide=Potri.006G097800.1.p locus=Potri.006G097800 ID=Potri.006G097800.1.v4.1 annot-version=v4.1 MVMGAHRHFEPIAKCSTEGRSNQTVAADLDGTLLVSRSAFPYFLLVAIEAGSLLRGLILLASVPFVYFTYLFISEAMAIKTFIFIAFAGLKIRDIELVSR SVLPKFYADDVHPETWRVFNSFGKRYIVTANPRIMVEPFVKTFLGADKVLGTELEATKSGRATGFIKKPGVLVGDHKRDALLKEFGTNLPDLGLGDRETD HDFMSICKEGYMVPGTKCEPLARNKLLSPVIFHDGRLVQRPTPLAALLTFLWMPIGIILSILRVYLNIPLPERLAWYTYKLLGIRVIVKGTPPPPPGKGY SGVLFVCNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSRERDKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVA INTKQSVFHGTTVRGHKLLDPYFVFMNPMPTYEVTFLNQLPKELTCKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYAKLAGTDGRVLSKKENA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	0	1
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	2.23	0.9511
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	3.74	0.9341
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G089000 [exp]	4.24	0.9330
AT5G56040			Leucine-rich receptor-like pro...		Potri.011G164800 [exp]	4.24	0.9083
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.019G093300 [exp]	5.47	0.8933	2,Pt-FLA9.2
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G087000 [exp]	6.32	0.9086
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	6.63	0.9194
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	6.63	0.9034
AT4G14940		ATAO1	amine oxidase 1 (.1)		Potri.010G088900 [exp]	6.78	0.8633
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	7.07	0.9074	Pt-KCS1.1

Compare expression of checked genes

Potri.006G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.