Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MDPIP1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00430 482 / 4e-174 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 467 / 4e-168 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G01620 454 / 3e-163 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G23400 447 / 4e-160 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT3G61430 441 / 8e-158 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G35100 387 / 2e-136 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G16850 379 / 3e-133 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37170 367 / 1e-128 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G54820 366 / 3e-128 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT3G53420 365 / 7e-128 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113300 [exp] 507 / 0 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 478 / 3e-172 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.008G065600 [exp] 473 / 1e-170 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.003G128600 [exp] 462 / 2e-166 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G128200 [exp] 384 / 2e-135 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 380 / 5e-134 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 379 / 2e-133 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 377 / 1e-132 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G013900 [exp] 372 / 8e-131 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028273 [exp] 473 / 3e-170 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10032283 [exp] 446 / 6e-160 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 446 / 6e-160 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10035483 [exp] 444 / 5e-159 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014840 [exp] 422 / 3e-150 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014978 [exp] 378 / 5e-133 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 378 / 6e-133 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 377 / 1e-132 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10019934 [exp] 370 / 5e-130 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 369 / 3e-129 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.006G098100.3 pacid=42768203 polypeptide=Potri.006G098100.3.p locus=Potri.006G098100 ID=Potri.006G098100.3.v4.1 annot-version=v4.1 ATGGAGGAGGGAGAAGAAGATGTGAAGGTGGGTGCAAATAGGTATGGAGAGGGGCAACCCATAGGAACAGCTGCTCAAACCCAACATGGCAAGGACTACA CAGAGCCACCTCCAGCACCACTTTATCAGCCTGGGGAGTGGTTATCATGGTCTTTTTACAGGGCAGGCATTGCTGAATTTGTTGCCACTTTTTTGTTCCT TTACATCACAGTTCTAACTGTCATGGGGGTGGCAAGATCCAGCACCAAGTGTTCCACGGTTGGCATTCAGGGTATTGCTTGGGCTTTTGGTGGGATGATT TTTGTTCTTGTCTATTGTACTGCTGGCATTTCAGGGGGTCACATCAACCCAGCTGTGACTTTCGGGCTGTTGTTGGCAAGGAAGCTGACATTGACAAGGG CAGTGTTTTACATGATAATGCAGTGTCTTGGAGCAATATGTGGTGCTGGTGTTGTAAAAGGTTTCCAAAAGAGCCCGTACGAGATACTTGGTGGAGGTGC AAACACTGTCAGTACAGGATACAGCAAGGGCAGTGGACTTGGCGTTGAGATTCTTGGCACCTTTGTACTTGTCTACACCGTCTTCTCTGCCACTGATGCC AAGCGTAGTGCCAGAGACTCCCATGTTCCTGTCCTGGCACCACTACCTATTGGATTTGCAGTGTTCTTGGTTCACTTGGCAACCATTCCTATTACAGGCA CCGGTATTAACCCAGCCAGAAGTCTTGGTGCAGCCCTCATCTACAACAAGGACAAAGCTTGGGATGATCATTGGATATTCTGGGTAGGACCATTCATTGG AGCGGCACTTGCATCCTTGTACCATCAGATAGTGATCAGGGCCATCCCTTTCAAATCCAAATGA
AA sequence Show only first row Show all	>Potri.006G098100.3 pacid=42768203 polypeptide=Potri.006G098100.3.p locus=Potri.006G098100 ID=Potri.006G098100.3.v4.1 annot-version=v4.1 MEEGEEDVKVGANRYGEGQPIGTAAQTQHGKDYTEPPPAPLYQPGEWLSWSFYRAGIAEFVATFLFLYITVLTVMGVARSSTKCSTVGIQGIAWAFGGMI FVLVYCTAGISGGHINPAVTFGLLLARKLTLTRAVFYMIMQCLGAICGAGVVKGFQKSPYEILGGGANTVSTGYSKGSGLGVEILGTFVLVYTVFSATDA KRSARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDKAWDDHWIFWVGPFIGAALASLYHQIVIRAIPFKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.006G098100 [exp]	0	1	Pt-MDPIP1.4
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.005G257000 [exp]	3.74	0.7474	Pt-HMG1.2
AT3G11050		ATFER2	ferritin 2 (.1)		Potri.008G072700 [exp]	9.16	0.7152	PFE2.2
AT1G68330			unknown protein		Potri.010G122800 [exp]	10.81	0.6955
AT3G01860			unknown protein		Potri.008G176300 [exp]	13.78	0.7205
AT5G43020			Leucine-rich repeat protein ki...		Potri.014G024400 [exp]	14.49	0.7389
AT2G06090			Plant self-incompatibility pro...		Potri.003G201300 [exp]	16.12	0.6464
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.019G018600 [exp]	17.14	0.7130
AT4G24430			Rhamnogalacturonate lyase fami...		Potri.002G110300 [exp]	17.20	0.7241
					Potri.012G125200 [exp]	24.37	0.6823
					Potri.006G120650 [exp]	24.65	0.7128

Compare expression of checked genes

Potri.006G098100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.