Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HPT3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03430 207 / 7e-70 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT5G39340 204 / 3e-68 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT3G29350 198 / 3e-66 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT3G21510 169 / 9e-55 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT3G16360 139 / 7e-43 AHP4 HPT phosphotransmitter 4 (.1.2) AT4G04402 114 / 5e-33 two-component phosphorelay mediator, putative (.1) AT1G80100 105 / 2e-29 AHP6 histidine phosphotransfer protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113500 [exp] 280 / 1e-98 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.014G136200 [exp] 234 / 1e-80 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.013G028300 [exp] 211 / 4e-71 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 207 / 9e-70 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.010G027100 [exp] 185 / 5e-61 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 181 / 3e-59 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.001G189900 [exp] 140 / 3e-43 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.003G032400 [exp] 132 / 3e-40 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2) Potri.018G046800 [exp] 126 / 8e-38 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012777 [exp] 194 / 2e-64 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 193 / 3e-64 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 184 / 9e-61 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 171 / 2e-55 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10042680 [exp] 157 / 1e-49 AT1G03430 142 / 2e-43 histidine-containing phosphotransfer factor 5 (.1) Lus10027965 [exp] 144 / 5e-45 AT1G03430 119 / 2e-35 histidine-containing phosphotransfer factor 5 (.1) Lus10023127 [exp] 132 / 4e-40 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10011487 [exp] 133 / 9e-40 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2) Lus10038280 [exp] 125 / 2e-37 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10025821 [exp] 124 / 5e-37 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [poplar] [flax] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Potri.006G098200.1 pacid=42770685 polypeptide=Potri.006G098200.1.p locus=Potri.006G098200 ID=Potri.006G098200.1.v4.1 annot-version=v4.1 ATGGATCTTCTTAATCAGTTGCAGAGACAGTATACCGATTTCACTACCCTTCTCTATCATGAGGGTTTTGTGGACGATCAGTTCACTCAGTTGCAAAAGC TGCAAGATGAGAGCAGCCCTGATTTTGTGGTGGAGGTTGTGTCTCTCTTCTTTGAAGATTGTGAAAAGCTTGTTAACAATATGGCCAAAGCCTTAGAACA GCAGGACGTTGACTTCAAACAGGTGGATTCTCATGTCCATCAACTGAAAGGTAGTAGCTCCAGCATAGGTGCAGCAAGAATTAAAAATGTCTGCATTGCC TTCAAAACTTTTTGTGAAGCCCAAAACCGTGAAGGGTGTTTGAGATGTCTGCAACAAGTGAATCATGAACACACTCAATTGAAGACCAATCTTCAATCTT TATTCACGCTGGAGCGACAGATTGTGGCAAATGGGGGGTCAATTCCTGTGATGCAATAA
AA sequence Show only first row Show all	>Potri.006G098200.1 pacid=42770685 polypeptide=Potri.006G098200.1.p locus=Potri.006G098200 ID=Potri.006G098200.1.v4.1 annot-version=v4.1 MDLLNQLQRQYTDFTTLLYHEGFVDDQFTQLQKLQDESSPDFVVEVVSLFFEDCEKLVNNMAKALEQQDVDFKQVDSHVHQLKGSSSSIGAARIKNVCIA FKTFCEAQNREGCLRCLQQVNHEHTQLKTNLQSLFTLERQIVANGGSIPVMQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.006G098200 [exp]	0	1	Pt-HPT3.2
AT4G18593			dual specificity protein phosp...		Potri.004G056600 [exp]	1.41	0.9024
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073400 [exp]	1.73	0.8981
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.004G175900 [exp]	3.00	0.8693	Pt-SKP1.5
AT1G57790			F-box family protein (.1)		Potri.006G212600 [exp]	3.46	0.8770
AT4G38260			Protein of unknown function (D...		Potri.004G206300 [exp]	3.87	0.8773
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Potri.011G138200 [exp]	5.91	0.8717
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.001G296500 [exp]	6.78	0.8389	LRRP.3
AT5G13970			unknown protein		Potri.014G143800 [exp]	7.74	0.8545
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.015G078900 [exp]	7.74	0.8471	PtrcGrx_C1.1
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.010G032301 [exp]	8.77	0.8612

Compare expression of checked genes

Potri.006G098200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.