Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74720 1272 / 0 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G17980 813 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 775 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 767 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 748 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G12970 741 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G48060 733 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G03680 711 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 709 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 684 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113800 [exp] 1449 / 0 AT1G74720 1521 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.013G055500 [exp] 813 / 0 AT5G17980 1233 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 784 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 776 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 758 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 747 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 743 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 741 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 736 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033097 [exp] 1320 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 778 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10010658 [exp] 774 / 0 AT5G17980 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 772 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 738 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 737 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 735 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 723 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 671 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 648 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G098700.1 pacid=42767855 polypeptide=Potri.006G098700.1.p locus=Potri.006G098700 ID=Potri.006G098700.1.v4.1 annot-version=v4.1 ATGACCGAACCACCCAAAACCGTTCGGAAAGTACTAGTAGAAGTAGTCGATGCACGTGATCTTCTCCCCAAAGACGGTCAGGGAAGCTCCAGCGCCTATG TCATTGCAGACTTTGACGGTCAAAGAAAACGAACCACCACAAAATACCGAGACCTCAATCCAGTATGGAAAGAGACCTTCGAGTTCACCGTTTCCGACCC AAGCAACATGGAGTTCGAAGAGCTGGAGATCGAGGTTTTTAATGACAAGAAATTCTGCAATGGCAGTGGCCGTAAAAACCATTTCTTGGGGAGGGTTAAA GTCTACGGCTCTCAGTTTTCTAAAAGAGGTGATGAAGGGATTGTTTATTTCCCTCTAGAGAAGAAAAGTGTGTTTAGCTGGATTAGAGGTGAAATCGGTC TAAGAATTTGCTATTACGATGAGTTACTTGAAGAAGATCAGCAACAACCCCCACCTCCCCCCGAGAAGGATGCACCTCCGCCTCAACAGCAAGACCCGCA AAAGTCTCCCGCAGTCACAATGGTTGAGGAGGTCAGGGTTTTCCAAGTCGCTGAACATGCAGAGTTTAATTACCACGATTATCACCACCATCAGAATGAC CACCATCAACAACATCAGAATGGGACTCACTCGCCTCCAGTTGCTATCGAGGAGTCTCCACCGCCAGTGGTGCATGTACATTCGGAACCACCACCACAAC AACCACAAGGACCGCTTCCAGAGGAGCCGCCACCGGGCCTTAATGCTCCTCCTCTACATTCTATGGAAACACACACTCACTACCATCCAGAGGTGAGGAT GATGCAGACTACGAGAGAGTCCAGTGGTAATAACAGAGTGAAGATAATGAGGAGGCCAAATGGAGATTTCACTCCGAAAGTAATTTCAGGCAGATTCAAA TCTGAACCGACGGAGAGAATCCTTCCTTATGATCTTGTTGAACCAATGCAGTATTTGTTTATCAGAATTGTCAAGGCTCGTGGTTTATCGCAAAACGAGA GTCCTTTTATCAAGTTAAGGACCTCAACTCATTTTGTGAGGTCTAAACCAGCGAGTTACCGACCTGGTGACTCACCAGGCTCGTTTGAGTGGCACCAGGT TTTTGCATTGGGCCATAATAACAAGACTGACGTACAGTCCTCCGATGCTGGCATTATAGAGATTTCAGTTTGGGACTCGCAGTCGGAGCAGTTTCTCGGA GGAGTTTGCCTTGATCTCTCTGATGTCCCGGTGAGGGATCCGCCGGACAGTCCACTTGCCCCTCAGTGGTACCGATTGGAAAGTGGCGCCGCCGCTGATC AGAACTCCTGTAGGGTGTCTGGTGATATCCAGCTCTCTGTTTGGATTGGGACTCAAGCTGATGATGCGTTTCCTGAAGCGTGGAGCTCAGACGCGCCATA CGTCGCCCACACGCGCTCGAAGGTTTACCAGTCCCCAAAGCTGTGGTATTTGAGAGTGACAGTTATTGAAGCTCAGGATCTTCGCATAGCATCCAATCTG CCACCGTTAACAGCACCGGAGATCAGAGTCAAGGCACAATTAGGATTCCAATCAGCGAAAACGAGGCGAGGGTCCATGAGCAATCATAGTACGTCGTTCC AGTGGATCGAGGACCTTATTTTTGTCGCCGGCGAGCCACTCGAAGAGTCGTTGATTCTGTTAGTGGAGGACCGTACAAACAAGGAAGCACTACTACTCGG GCACATCATTATTCCTGTGAGCTCAATTGAGCAACGGATTGATGAACGCCACGTGGCATCCAAATGGTTCGCACTGGAAGGAGGTGGGGACACCGGGGGA GGAGGTGGTGGTGTTAATGGCGGGTCCTACCGTGGGAGAATCCATTTACGTCTCTGTTTGGAGGGAGGGTATCACGTGCTGGATGAAGCGGCGCACGTGT GCAGTGATTTTAGACCCACGGCTAAGCAGCTATGGAAGCCAGCTATTGGGGTTTTGGAGCTGGGGATTCTAGGAGCTCGTGGGTTGCTGCCCATGAAGAC CAAGGGTGGAGGCAAAGGTTCGACCGATGCTTATTGTGTGGCTAAATTTGGCAAAAAATGGGTCCGCACAAGAACAATCACAGATAGCTTTGATCCACGT TGGAACGAGCAGTATACGTGGCAGGTCTATGATCCTTGCACGGTTCTCACCATTGGTGTATTTGACAATTGGCATATGTTTGGTGATATGTCTGATGATA AACCTGATTGTCGTATAGGAAAAATACGCATACGAGTATCTACATTGGAGAGCAACAAGGTGTATACGAATTCATATCCTTTGTTGGTTTTATTAAGAAC CGGGTTGAAGAAAATGGGTGAGATCGAATTAGCGGTTCGGTTTGCTTGCCCAAGCTTGTTGCCAGATACTTGCGCGGCTTATGGCCAGCCATTACTTCCT AAAATGCACTATCTTCGCCCACTCGGGGTAGCCCAACAAGAGGCATTGCGTGGAGCAGCTACCAGAATGGTTTCTTTGTGGCTTGCACGGTCCGAGCCAC CATTGGGACCAGAGGTTGTTAGGTATATGTTGGATGCGGATTCTCATACATGGAGCATGAGGAAGAGTAAAGCTAATTGGTTCCGAATTGTAGCGGTTCT TGCGTGGGCTGTCGGGTTGGCTAAATGGTTGGATGATATTCGGAGATGGAGGAACTCGGTTACAACAGTATTAGTTCATGCTTTATATTTGGTGCTTGTT TGGTATCCGGATTTGGTTGTCCCAACAGGGTTTTTATATGTGATTTTGATTGGTGTTTGGTATTATAGATTCAGACCGAAGATACCAGCGGGTATGGATA TCCGGTTATCCCAAGCGGAAACGGTTGACCCGGACGAATTGGATGAGGAATTTGATACAATACCAAGTATGAAACCACCTGAAATTATAAGGGCCCGTTA TGACAGGTTACGGGTGCTGGCAGCCCGGGTCCAAACAGTTTTGGGTGATTTTGCAACCCAAGGGGAGCGGGTTCAAGCTTTGGTCAGTTGGAGAGACCCG AGGGCCACAAAGTTGTTCATAGGGGTGTGTTTGGCTATAACACTGATACTCTATGTGGTTCCACCAAAAATGGTAGCAGTGGCCTTGGGATTCTATTATT TACGACACCCCATGTTTAGGGACCCGATGCCACCGGCTAGTTTGAACTTTTTCCGGCGGCTACCAAGCTTATCTGATCGGTTAATGTAG
AA sequence Show only first row Show all	>Potri.006G098700.1 pacid=42767855 polypeptide=Potri.006G098700.1.p locus=Potri.006G098700 ID=Potri.006G098700.1.v4.1 annot-version=v4.1 MTEPPKTVRKVLVEVVDARDLLPKDGQGSSSAYVIADFDGQRKRTTTKYRDLNPVWKETFEFTVSDPSNMEFEELEIEVFNDKKFCNGSGRKNHFLGRVK VYGSQFSKRGDEGIVYFPLEKKSVFSWIRGEIGLRICYYDELLEEDQQQPPPPPEKDAPPPQQQDPQKSPAVTMVEEVRVFQVAEHAEFNYHDYHHHQND HHQQHQNGTHSPPVAIEESPPPVVHVHSEPPPQQPQGPLPEEPPPGLNAPPLHSMETHTHYHPEVRMMQTTRESSGNNRVKIMRRPNGDFTPKVISGRFK SEPTERILPYDLVEPMQYLFIRIVKARGLSQNESPFIKLRTSTHFVRSKPASYRPGDSPGSFEWHQVFALGHNNKTDVQSSDAGIIEISVWDSQSEQFLG GVCLDLSDVPVRDPPDSPLAPQWYRLESGAAADQNSCRVSGDIQLSVWIGTQADDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTVIEAQDLRIASNL PPLTAPEIRVKAQLGFQSAKTRRGSMSNHSTSFQWIEDLIFVAGEPLEESLILLVEDRTNKEALLLGHIIIPVSSIEQRIDERHVASKWFALEGGGDTGG GGGGVNGGSYRGRIHLRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPAIGVLELGILGARGLLPMKTKGGGKGSTDAYCVAKFGKKWVRTRTITDSFDPR WNEQYTWQVYDPCTVLTIGVFDNWHMFGDMSDDKPDCRIGKIRIRVSTLESNKVYTNSYPLLVLLRTGLKKMGEIELAVRFACPSLLPDTCAAYGQPLLP KMHYLRPLGVAQQEALRGAATRMVSLWLARSEPPLGPEVVRYMLDADSHTWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWRNSVTTVLVHALYLVLV WYPDLVVPTGFLYVILIGVWYYRFRPKIPAGMDIRLSQAETVDPDELDEEFDTIPSMKPPEIIRARYDRLRVLAARVQTVLGDFATQGERVQALVSWRDP RATKLFIGVCLAITLILYVVPPKMVAVALGFYYLRHPMFRDPMPPASLNFFRRLPSLSDRLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Potri.006G098700 [exp]	0	1
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	2.44	0.9329
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	4.24	0.9225
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.005G161500 [exp]	8.06	0.8427
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.001G252400 [exp]	10.48	0.8857
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	11.61	0.9061	ATGSL11.2
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	13.41	0.9048
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	15.09	0.8751
AT3G49810			ARM repeat superfamily protein...		Potri.002G116600 [exp]	15.19	0.8367
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	17.66	0.8982	Pt-VHA1.1
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.006G230700 [exp]	18.70	0.8709

Compare expression of checked genes

Potri.006G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.