Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 786 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 735 / 0 EFR EF-TU receptor (.1) AT3G47580 734 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 724 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 714 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 444 / 1e-139 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 414 / 1e-126 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 404 / 3e-122 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 397 / 4e-121 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G48940 391 / 2e-118 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115900 [exp] 942 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 935 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 934 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 933 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 909 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 907 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 903 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 885 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 884 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 866 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 860 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 858 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 855 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 854 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 851 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 847 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 842 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 840 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010199 [exp] 824 / 0 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G099100.1 pacid=42768164 polypeptide=Potri.006G099100.1.p locus=Potri.006G099100 ID=Potri.006G099100.1.v4.1 annot-version=v4.1 ATGTCTTGTTCATTGTTCTTGAAGGTAATCTTGCAATCCTGTTTCGTTGTAATTTTTTTGCATGCGCCATCCTTCACTCAAGCAGCTACCACTTTGAGTG GAAATGAGACTGATCATCTTGCTTTGCTTGCCATCAAAGCTCAGATAAAACTTGACCCTCTTGGTCTGATGAGCTCATGGAATGATTCTCTCCATTTCTG TAACTGGGGGGGCATCATTTGTGGTAACCTTCATCAACGAGTCATCACTTTGAACCTTAGCCACTATGGCTTGGTAGGTTCACTCTCACCACAAATTGGA AACATGTCCTTCCTTAGAGGTATTAGCTTAGAACAAAACTACTTTCATGGTGAAATCCCACAAGAAATAGGCCGTCTAGACAGGCTAAAGTACATTAATT TCTCCAACAACTCTTTCTCTGGAGAGATCCCAGCCAATCTTTCTGGTTGTTCTAGCCTTTTAATGCTTCGTTTGGGGTTCAATAAATTGACAGGCCAAAT CCCATACCAGTTAGGATCATTGCAGAAGCTCGAGAGAGTTCAGCTTCATTACAACAATCTCAACGGGTCAGTTCCGGATTCTTTAGGAAACATCTCATCT GTTAGGTCTCTGTCCTTGTCAGTTAACAATTTTGAGGGGAGCATACCAGATGCATTAGGCCGTTTAAAGACCTTGAATTTTCTTGGCCTAGGCTTGAATA ATTTGTCTGGAATGATTCCTCCCACAATTTTCAATCTCTCATCTCTTATAGTCTTTACTTTGCCCTATAATCAACTACATGGCACCTTGCCATCAGACTT GGGACTTACACTTCCTAATTTGCAAGTCTTGAATATTGGTCATAATTTTTTTTCTGGACCTCTTCCTGTGTCAATATCCAATGCTTCAAATCTTCTAGAA TTGGATATTGATACAAGTAATTTCACTAAAGTCACGATTGATTTTGGAGGCTTACCTAATCTCTGGTCACTAGCTCTTTCCTCCAATCCCCTTGGGAAAG GAGAAGCTGATGACCTGAGTTTCATAGATTCCTTAACTAAATGTAGGAATTTGCGGTTATTAGACTTGAGTAATAGCCACTTCGGAGGGGTGATTCCTGA TTCTATAGGTAACCTCTCAACCCAACTTTTTCTGTTGAAGTTGAGAGGAAATCAACTATCTGGTAGCATCCCTACTGTAATCGAGAACCTCCTTAACTTG GCGGAGTTGACAGTGGAGAAAAACTACTTGAGTGGGAGTATACCTTCTGTACTAGGTAACCTTAAGATGCTACAAAGATTGGACCTGTCAGAAAATAAGC TTTCGGGGCTGATTCCATCATCCCTTGGAAACATCACTCAATTGTTTGAGTTTCATCTCCAAAAGAATCAGATAATGGGGAGCATTCCTTCCAGTTTTGG AAACCTGAAATACTTGCAAAACCTTGACCTTTCTCAAAACCTTCTCAGTGGTACGATACCCAAAGAGGTCATGGGTCTTTCTTCCCTAACAATCTCTTTG AACCTGGCTCAAAATCAACTGACAGGTCCCCTGCCTCCAGAAGCGCAAAACTTGATGAATCTTGGTTACTTGGATGTTTCCGAGAACAAGTTATACGGTC AAATTCCCAGTAGTCTAGGCAGTTGTGTAACCTTGGAGAAACTTCACATGCAGGGTAACTTCTTTGAAGGAGCTATTCCTCCTTCATTTAGCTCCTTGAG AGGACTCCGTGACATGGATCTTTCCCGCAACAATTTGTCTGGCCAAATTCCACAGTTTCTAAAGCGCCTTGCACTCATTAGCTTGAATCTTTCATTCAAC CATTTCGAGGGTGAGGTACCAAGGGAAGGGGCTTTCCTGAATGCAACAGCAATCTCGTTATCTGGAAACAAAAGGCTTTGTGGTGGCATACCACAATTAA AATTGCCGCGATGTGTTGTTAACAGATCAAAGAATGGAAAGACGTCTCGGCGGGTCAAGTTAATGATTGCAATACTTACCCCACTTCTTGTATTAGTTTT CGTCATGTCTATTCTTGTCATCAATCGATTGAGAAAGAAGAATAGGCAGTCCTCTCTAGCATCTTCATTGTCATCAAAACAAGAACTGTTATTGAAGGTT TCCTATAGAAATCTCCATAAAGCTACAGCAGGCTTTTCCTCTGCCAATTTGATTGGTGCTGGTAGCTTTGGCTCCGTATACAGAGGCATTCTGGATCCAA ATGAAACAGTTGTGGCAGTGAAGGTGCTGTTCATGCGTCAACGAAAAACTTTGAAGAGCTTCATGGCTGAATGTGAAATACTTAAGAACATTCGGCATCG TAATTTGGTCAAGATCCTGACGGCTTGCTCGAGTGTAGATTTCCAAGGAAATGACTTCAAAGCTCTAGTCTATGAGTTTATGCCCAATGGGACTTTGGAA AGTTGGCTGCATTCCTTTCCAAGGACAAATGGCATCAATGAGGACCTGAAAATATTAAGCTTTCATCAAAGGTTAAACATTGCTATTGATGTGGCTGCTG CTCTCAATTATCTTCATTATCAGTGCCATAAGCCAGTTGTTCATTGCGATTTAAAGCCAAGCAATGTTCTCCTTGACAATGATATGACAGCTCACGTGGG TGACTTTGGGTTAGCTAGGTTCATTGAAGAAGCCATAAATCCGTCTCATCGGAATGAAAGCAGCTCAGTTGGACTGAAGGGAACTGTGGGATATGCTGCA CCAGAGTATGGTATGGGAAGTAAGCCTTCGATGAATGGTGATGTATACAGCTACGGAATCCTCTTGTTGGAGATGTTTACAGGAAAGAGGCCTACTGATG ACATGTTCCATGATGGATTGGATCTCCATAATTTTGTTAAGACAGCATTGCCTGATCAAATTTCAGAAGTTGTAGACCCATTATTTGTTACTGGAGGTGA AGGAGATGAAGAGGAGACCGGCCACTTAGAGAATAGAACCAGGGGACAAATAAAAAAGGACCAAATGCAAGAGAGTTTGATAGCAATCCTAAGAATTGGA ATTGCTTGTTCGGTGGAATCAATCAATGAAAGAAAGAACGTTAAAGATGTTCTCACAGAATTGCAGAATGTCAGGAGATTTTTTCTTGGATCCGGGAGGA ACTAA
AA sequence Show only first row Show all	>Potri.006G099100.1 pacid=42768164 polypeptide=Potri.006G099100.1.p locus=Potri.006G099100 ID=Potri.006G099100.1.v4.1 annot-version=v4.1 MSCSLFLKVILQSCFVVIFLHAPSFTQAATTLSGNETDHLALLAIKAQIKLDPLGLMSSWNDSLHFCNWGGIICGNLHQRVITLNLSHYGLVGSLSPQIG NMSFLRGISLEQNYFHGEIPQEIGRLDRLKYINFSNNSFSGEIPANLSGCSSLLMLRLGFNKLTGQIPYQLGSLQKLERVQLHYNNLNGSVPDSLGNISS VRSLSLSVNNFEGSIPDALGRLKTLNFLGLGLNNLSGMIPPTIFNLSSLIVFTLPYNQLHGTLPSDLGLTLPNLQVLNIGHNFFSGPLPVSISNASNLLE LDIDTSNFTKVTIDFGGLPNLWSLALSSNPLGKGEADDLSFIDSLTKCRNLRLLDLSNSHFGGVIPDSIGNLSTQLFLLKLRGNQLSGSIPTVIENLLNL AELTVEKNYLSGSIPSVLGNLKMLQRLDLSENKLSGLIPSSLGNITQLFEFHLQKNQIMGSIPSSFGNLKYLQNLDLSQNLLSGTIPKEVMGLSSLTISL NLAQNQLTGPLPPEAQNLMNLGYLDVSENKLYGQIPSSLGSCVTLEKLHMQGNFFEGAIPPSFSSLRGLRDMDLSRNNLSGQIPQFLKRLALISLNLSFN HFEGEVPREGAFLNATAISLSGNKRLCGGIPQLKLPRCVVNRSKNGKTSRRVKLMIAILTPLLVLVFVMSILVINRLRKKNRQSSLASSLSSKQELLLKV SYRNLHKATAGFSSANLIGAGSFGSVYRGILDPNETVVAVKVLFMRQRKTLKSFMAECEILKNIRHRNLVKILTACSSVDFQGNDFKALVYEFMPNGTLE SWLHSFPRTNGINEDLKILSFHQRLNIAIDVAAALNYLHYQCHKPVVHCDLKPSNVLLDNDMTAHVGDFGLARFIEEAINPSHRNESSSVGLKGTVGYAA PEYGMGSKPSMNGDVYSYGILLLEMFTGKRPTDDMFHDGLDLHNFVKTALPDQISEVVDPLFVTGGEGDEEETGHLENRTRGQIKKDQMQESLIAILRIG IACSVESINERKNVKDVLTELQNVRRFFLGSGRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	0	1
AT4G01700			Chitinase family protein (.1)		Potri.014G111800 [exp]	1.00	0.9250	CHI2.1
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.011G103600 [exp]	2.23	0.8326
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.001G020900 [exp]	4.24	0.8135
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.001G330501 [exp]	5.91	0.8232
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.004G036300 [exp]	7.48	0.7859
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G118700 [exp]	11.04	0.8597
					Potri.001G029000 [exp]	11.74	0.8567
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.001G029800 [exp]	12.84	0.7810
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	13.22	0.7586
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123100 [exp]	13.56	0.7636

Compare expression of checked genes

Potri.006G099100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.