Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 155 / 1e-43 Carbohydrate-binding-like fold (.1.2) AT5G26570 57 / 1e-08 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114500 [exp] 662 / 0 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 164 / 4e-46 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.002G234500 [exp] 53 / 5e-07 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 50 / 4e-06 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002495 [exp] 185 / 2e-52 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10004826 [exp] 180 / 2e-50 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10027767 [exp] 176 / 2e-47 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 172 / 2e-46 AT2G40070 280 / 4e-83 unknown protein Lus10018226 [exp] 133 / 3e-34 AT5G01260 124 / 3e-32 Carbohydrate-binding-like fold (.1.2) Lus10041275 [exp] 47 / 5e-05 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10037434 [exp] 44 / 0.0004 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G099200.1 pacid=42767447 polypeptide=Potri.006G099200.1.p locus=Potri.006G099200 ID=Potri.006G099200.1.v4.1 annot-version=v4.1 ATGGAAACCCTAGCCAGTTCTTTTTCAAAGATCATCCTTCACAAAAATGGAGACAGACCCTTTTTCTCATCCAGAGAATTGAGACATGAAATTAGTATTT TTCCATCAAAGAAGCTTGTTCATAATGTTGGCTTCTTGCACTGCCTATGTGTGAAACATAAGCCTATCTGTACAATTCGTGTTTCTTCTTCTCCCTCACC TGAGTCCCAGGTAGACTTGGAGACCAGAGATGATCAAAACCATGAAACAAATGAATCAAAGACAGTTCGTGTCAAATTCCAGCTACAGAAAGAGTGTTCC TTTGGTGAGCAATTTACCATAGTGGGGGATGATCCTCTGTTGGGATTATGGGATCCTGGAAGTGTAATACCACTGAACTGGTCAGATGAGCATCTTTGGA CTGTTGAACTGGATTTACCGGTTGGAAAATCCTTCCAGTTCAAGTTCATACTGAAAGGTATTGGTGGGGGAATTTGCTGGCAACCGGGTCCTGATCGGGT TCTCCAAACTCGGGAAACTGATAATACAATCGTAGTTTGGGAAGATTGGGAAGATGCTGCATTGCAGAAGGTAACAGAGGAAGAACCATCTGCTAATGGG ACTGAGGAACCTTCTGTCAACCCAGAAATGCTGATTGTTACTGAGAACTTGACTCATCAAAAGGAAGAATTGGTTTCTGATGCAAGCAATGGAGGAGTTA CTATGAATGTGAGTTCTAACCCGGCAAAGAAGCCAACTCCAGTGACTTATGAGAAACGAATTGTTGCTGATAACATTTCTCCTATGCAAGAGAAGCCTGT AGCAATTGTAGCAGATAACATACGTTACTCAGAGGGGGCTTCTGCTGTGAATGAAGTGTTAGTTGAAAAGAGAACTAAGTCAAACAAGAGTACGGTGATC AGAGAGGATGTTGTCAGAAATGATGATGCTCCAACAGCCATAAACTCATCAAAGTCTGACGTCGGAGGAAGTGTGGTTACTCACGAAGGAGATCCTGTTC TGGTACCTGACTTGTCTGCAGTATCAGTTCTACCAAATGAAGCAGCTAATGACAATGAAGGTGAGAGAAGTCGGGCCTTTCATGCCTCTGTTGGAGTTGA TGAAGTTGAGAATCACAATTTCCTACAGTTTGATGAGAAGCATGAAATTGGTGACAAATCACTTCGGGAAGAAACAGTTAATGGTTTCATTGACGGGGAG CAGCACGGTAACGAAGTCAGACATAAGCTACAGGCGGAAGAAGAAAAGCGTGATACTGATGATGACAATCCACATCGAGGAGAAACAGTCAATGGGCTCA GTGATGAGAAGCAGCATGGCTATGAACTCGTATACAAGCCACTGGCCCAAGAAGAAAAGAAGCAAGAGCTAGTTAGAAATAGTATTGTTCAAAATGACCT GCACTGGATACGGAAGCTGCTAACCAATTTAGGATTTCTTTAG
AA sequence Show only first row Show all	>Potri.006G099200.1 pacid=42767447 polypeptide=Potri.006G099200.1.p locus=Potri.006G099200 ID=Potri.006G099200.1.v4.1 annot-version=v4.1 METLASSFSKIILHKNGDRPFFSSRELRHEISIFPSKKLVHNVGFLHCLCVKHKPICTIRVSSSPSPESQVDLETRDDQNHETNESKTVRVKFQLQKECS FGEQFTIVGDDPLLGLWDPGSVIPLNWSDEHLWTVELDLPVGKSFQFKFILKGIGGGICWQPGPDRVLQTRETDNTIVVWEDWEDAALQKVTEEEPSANG TEEPSVNPEMLIVTENLTHQKEELVSDASNGGVTMNVSSNPAKKPTPVTYEKRIVADNISPMQEKPVAIVADNIRYSEGASAVNEVLVEKRTKSNKSTVI REDVVRNDDAPTAINSSKSDVGGSVVTHEGDPVLVPDLSAVSVLPNEAANDNEGERSRAFHASVGVDEVENHNFLQFDEKHEIGDKSLREETVNGFIDGE QHGNEVRHKLQAEEEKRDTDDDNPHRGETVNGLSDEKQHGYELVYKPLAQEEKKQELVRNSIVQNDLHWIRKLLTNLGFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	0	1
AT4G31980			unknown protein		Potri.003G209500 [exp]	2.44	0.9027
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	3.46	0.8807
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	4.58	0.8729
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	4.89	0.8800	ENOD8.2
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	5.65	0.8655
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.010G148100 [exp]	7.34	0.8396	Pt-GAL1.3
AT3G14470			NB-ARC domain-containing disea...		Potri.007G137101 [exp]	7.34	0.8651
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Potri.002G179300 [exp]	7.74	0.8492
AT1G67340			HCP-like superfamily protein w...		Potri.001G056800 [exp]	8.12	0.8212
AT2G20410			RNA-binding ASCH domain protei...		Potri.019G017900 [exp]	8.71	0.8184

Compare expression of checked genes

Potri.006G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.