Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01270 363 / 6e-119 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) AT4G21670 213 / 3e-61 FRY2, FLP1, ATCPL1, CPL1 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114600 [exp] 654 / 0 AT5G01270 923 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.004G040000 [exp] 249 / 3e-74 AT4G21670 1139 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.011G049400 [exp] 240 / 1e-70 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027766 [exp] 463 / 9e-153 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10018479 [exp] 245 / 1e-72 AT4G21670 1100 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10011195 [exp] 228 / 2e-66 AT4G21670 1044 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.006G099302.1 pacid=42767688 polypeptide=Potri.006G099302.1.p locus=Potri.006G099302 ID=Potri.006G099302.1.v4.1 annot-version=v4.1 ATGTTTATTAAATGTCTTCCAAGATGCATGTGCCATCCAAAGATGGCAATGGTAATAGATGATCGGTTAAAGGTCTGGGAAGACATGGATCAACCTCGAG TTCATGTAGTTCCTGCATTTACTCCATATTATGTTCCTCAAGCAGAGACGGCGAACGCCATTCCAGTCTTATGTGTGGCAAGAAATGTTGCATGCAATGT CAGAGGTTGTTTCTTTAAAGAATTTGTTGAGATCTTAATACGAAGAATGTCTGAAGTCTTTTATGAAGACGAGGTGAAAAGCTTACCTCCTCCTCCTGAT GTGAGCAACTACATGATGGCAGAGGATAGTGGTTTTGTACCCAATGGCAATAGCAATGCCCTCTTTAGTGAAGGGATGAGTGACATTGAAGCTGAACGGA GATTGCACCAATCAGATGACAAGAATGTTATGGACCCAGTAACTCATTCTATAACAAACAGTGCTGAAGTGAGATCTGAAATCCCCCAGCCTCCTGTAGC AATAATTCCAAATATTGTTGGACTGACCTTGTCGGCAAGACTCTTGCCTTCTCAGAAACCTAGTTTACTTGGTGCTCCTGTTAGACAAGATTTAAGCAAT CAAAGTTCAGGTCAACCCCCACTTCTTTCTAGAGTACCTGTAGCAATATCATCATCCACTCTACAGCTTCAGGGATGCTGGTTGGTGGAAGAAGATATTG GCAAAGCAGAATCAAATTACCGACCTTCAGCAATAGCCCAAGAATTGGATTCTTTAAAATCTGATAAGCTGCGAGGAACACAGAATCCATTTGCTCATGG CGCATCAGCCTATGCTTCCTCTGGTTTTGTGTCACCTGCTTCAGAATCGAAGGATGAAGAGGCACTTGCTGGAAATGACATGCATAAACAGTATCTTCCT GCTGGAGAGGTTGGTGTGTCTCAGAATCACGTTTCCTCTAGTAGCAGAGAGTTTCAAGCTGAAGCTGGGAAATTCAACCTGCTACCATCCCACTTGTCTA TTGGAGTGCTGCAAGAAATTGGACAAGGATGCAGATCCAAGGTGGAGTTCAAGTCTGTTGTAAGCACCAGTAAAGATTTGCAATTTTCTGTTGAGGTTTT GTTCACTGGTGAAAAGATAGGTGTGGGAATGGGTACAACAAGGAAGGATGCACAGCAGCAAGCAGCTGAGAATGCCCTTCGCAGCTTGGCAGAATGGATT TGTATGGGACATTACAAATCCTGGATCAAGTGA
AA sequence Show only first row Show all	>Potri.006G099302.1 pacid=42767688 polypeptide=Potri.006G099302.1.p locus=Potri.006G099302 ID=Potri.006G099302.1.v4.1 annot-version=v4.1 MFIKCLPRCMCHPKMAMVIDDRLKVWEDMDQPRVHVVPAFTPYYVPQAETANAIPVLCVARNVACNVRGCFFKEFVEILIRRMSEVFYEDEVKSLPPPPD VSNYMMAEDSGFVPNGNSNALFSEGMSDIEAERRLHQSDDKNVMDPVTHSITNSAEVRSEIPQPPVAIIPNIVGLTLSARLLPSQKPSLLGAPVRQDLSN QSSGQPPLLSRVPVAISSSTLQLQGCWLVEEDIGKAESNYRPSAIAQELDSLKSDKLRGTQNPFAHGASAYASSGFVSPASESKDEEALAGNDMHKQYLP AGEVGVSQNHVSSSSREFQAEAGKFNLLPSHLSIGVLQEIGQGCRSKVEFKSVVSTSKDLQFSVEVLFTGEKIGVGMGTTRKDAQQQAAENALRSLAEWI CMGHYKSWIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099302 [exp]	0	1
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	1.73	0.8511
					Potri.006G273733 [exp]	2.64	0.8621
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	3.16	0.8382
AT1G13570			F-box/RNI-like superfamily pro...		Potri.008G110400 [exp]	3.46	0.8137
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.001G056400 [exp]	6.00	0.8048
					Potri.010G026350 [exp]	8.83	0.8330
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	10.00	0.8028
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	10.81	0.8190
AT3G42050			vacuolar ATP synthase subunit ...		Potri.019G047800 [exp]	13.96	0.8094
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.003G032300 [exp]	14.07	0.7361	ETR1.2

Compare expression of checked genes

Potri.006G099302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.