Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01520 325 / 3e-113 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 293 / 1e-100 RING/U-box superfamily protein (.1.2) AT5G58787 276 / 4e-94 RING/U-box superfamily protein (.1.2) AT1G24440 187 / 6e-59 RING/U-box superfamily protein (.1) AT1G13195 183 / 2e-57 RING/U-box superfamily protein (.1.2) AT3G48030 45 / 2e-05 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G41350 45 / 2e-05 RING/U-box superfamily protein (.1) AT2G20030 44 / 4e-05 RING/U-box superfamily protein (.1) AT5G05280 43 / 4e-05 RING/U-box superfamily protein (.1) AT5G37280 43 / 8e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115300 [exp] 382 / 5e-136 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 321 / 8e-112 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 314 / 7e-109 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 313 / 1e-108 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 300 / 1e-103 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 208 / 4e-67 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 203 / 3e-65 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.010G052700 [exp] 200 / 6e-64 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 191 / 1e-60 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002491 [exp] 358 / 3e-126 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 357 / 4e-126 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10001209 [exp] 312 / 2e-108 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 311 / 3e-108 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 206 / 2e-66 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 202 / 4e-65 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 202 / 1e-64 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 201 / 2e-64 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 198 / 4e-63 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006253 [exp] 194 / 2e-61 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.006G099600.1 pacid=42767037 polypeptide=Potri.006G099600.1.p locus=Potri.006G099600 ID=Potri.006G099600.1.v4.1 annot-version=v4.1 ATGAAAAGGGAAATGAGGAAATCGTTTAAGGATTCTCTTAAAGCGCTTGAAGCTGATATTCAGTTTGCCAACACTCTAGCTTCTGTTTATCCTAGGGAAT ATGATGGTGCCTGCCTTCAAATGAGATTATCCTACAGCCCTGCCGCTCACCTTTTTCTTTTTCTTGTCCAATGGACTGGTTTTCACCTAGCTGGTGCCTT GGGATTGCTTAGAATTCTTATATACAAGGCTTATGAGGATGGAAAAACAACCATGTCTATTCATGAAAGAAAGGCTAGCGTAAGAGAGTTCTATGGGGTG ATATTTCCTTCTTTACTGCAACTTCAAAGAGGAATCACTGATGTAGAAGACAGAAAGCAAAAGGAAATCTGTGCAAAGTACAAAAAGAAAGATGAAATGG ACAAAGGAAAGATCTCTGAAATTGATTTAGAGAGAGAAGAAGAATGTGGCATTTGCATGGAGATTAATAGCAGGGTTGTATTGCCCAAATGCAATCATGC AATGTGTTTGAAGTGCTATCGGGATTGGCGTGCTCGCTCTCAATCATGTCCTTTCTGCCGAGACAGTCTCAAGAGAGTCAACTCAGGTGATCTTTGGATC TACACCAGCAGAAATGAGATTATCGACTTGTCTTCAATCACAAGACAGAATTTGAAGAGACTGTTCATGTACATTGACAGGTTGCCTCTCATTGTTCCTG ATCCAGTGCTTGTTCCTTACGAGCCCTGTTACCGGTTTTAG
AA sequence Show only first row Show all	>Potri.006G099600.1 pacid=42767037 polypeptide=Potri.006G099600.1.p locus=Potri.006G099600 ID=Potri.006G099600.1.v4.1 annot-version=v4.1 MKREMRKSFKDSLKALEADIQFANTLASVYPREYDGACLQMRLSYSPAAHLFLFLVQWTGFHLAGALGLLRILIYKAYEDGKTTMSIHERKASVREFYGV IFPSLLQLQRGITDVEDRKQKEICAKYKKKDEMDKGKISEIDLEREEECGICMEINSRVVLPKCNHAMCLKCYRDWRARSQSCPFCRDSLKRVNSGDLWI YTSRNEIIDLSSITRQNLKRLFMYIDRLPLIVPDPVLVPYEPCYRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.006G099600 [exp]	0	1
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Potri.015G098400 [exp]	1.73	0.8199	CUS3.2
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.003G215201 [exp]	6.00	0.8099
AT2G20740			Tetraspanin family protein (.1...		Potri.019G101800 [exp]	6.63	0.8438
AT5G15790			RING/U-box superfamily protein...		Potri.003G161600 [exp]	8.48	0.7976
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	9.48	0.7241
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.006G057600 [exp]	11.18	0.7597
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G156200 [exp]	11.66	0.8165
AT4G25433			peptidoglycan-binding LysM dom...		Potri.012G135100 [exp]	12.04	0.8145
AT1G18720			Protein of unknown function (D...		Potri.010G166500 [exp]	13.78	0.7655
AT3G47510			unknown protein		Potri.013G066600 [exp]	14.07	0.7413

Compare expression of checked genes

Potri.006G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.