Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01510 519 / 0 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT3G45890 105 / 6e-24 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G49820 104 / 7e-24 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT1G13770 89 / 7e-19 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G31190 89 / 8e-19 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT2G23470 80 / 8e-16 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095700 [exp] 94 / 2e-20 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 93 / 6e-20 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 91 / 3e-19 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 83 / 5e-17 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 75 / 4e-14 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 54 / 8e-08 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027788 [exp] 565 / 0 AT5G01510 511 / 3e-178 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Lus10035510 [exp] 555 / 0 AT5G01510 511 / 3e-178 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 104 / 1e-23 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 102 / 8e-23 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 102 / 9e-23 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 101 / 1e-22 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 99 / 4e-22 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10003558 [exp] 83 / 5e-17 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 73 / 1e-13 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 73 / 2e-13 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [poplar] [flax] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Potri.006G099700.1 pacid=42767463 polypeptide=Potri.006G099700.1.p locus=Potri.006G099700 ID=Potri.006G099700.1.v4.1 annot-version=v4.1 ATGTCGTACCCCTTGCAACTCTCATTCCCTGGACTCGCTTTTGAATCTTCGAAAACCCGCACGAGAAAGAAAGCGCACCACTTCCAAACTCTCTGTTGTT CCTCCTTACAACATCCCAGTCTTCAAGAAAAGCCTGATAACGAGGTGATTTTGTTGGAGAGATATGGAAATGGAACTGCTAAAAGATATACATTAGACGA CGCTGTGCAACTACAAGGTTTTCTTGAGAAAAATGGCTCTGAAAATCGTAGCTTCGAGGAATCACGTTTGTCTGAAGCCGGATTGTCCTGGCTTCCGGAT ATTCTCAAAGATTTTATTCTACCTGCTGGCTTTCCAGGGTCGGTTTCGGATGACTACTTGCAGTATATGGTGTTACAGTTTCCTACCAACATTACTGGGT GGATATGCCACACTTTAGTCACATCAAGTCTTCTTAAGGCTGTTGGTGCTGGCTCTTTCACAGGAACTGACGCTGCTGCTTCTGCTGCCGCTATCAGATG GGTTTCAAAGGATGGCATTGGAGCTCTAGGGCGGTTATTCATTGGTGGACGGTTTGGAGATCTTTTTGATGATGATCCAAAACAATGGCGCATGTATGCG GATTTCATTGGCAGTGCTGGGAGCATCTTTGATCTAACCACGCAAGTATATCCTGCCTATTTTCTACCATTAGCTTCTCTTGGAAACTTGACCAAGGCTG TAGCAAGAGGACTGAAAGATCCTTCATTTCGTGTGATTCAAAATCATTTTGCGGTCTCTGGAAATCTGGGAGAGGTAGCAGCAAAGGAGGAAGTTTGGGA AGTAGGTGCACAGTTGCTTGGCCTTGCACTGGGCATACTGATCCTGGATACACCTGACCTTGTAAAATCCTTTCCATTGCTGACATCAACATGGATGAGC ATGCGGCTTCTGCATCTTTGGTTACGTTATCAATCACTTTCAGTTCTGCGATTTGACACAATAAATCTCAAGCGTGCTCGTATATTGATAAAATCACATA TTTTGCAATCTCGTGTTCTGGGTTGTGTTGATTGCAACCAGGATGAGAACATTTTATCATGGGAGACATTCACTAGACCACGAATTATTTTTGGTGTGCC TTTAGAGGAGATGATTGGTGGTGAGAGATCTGTTGCCAAGATAAAGATGCTCCTGAAACTATATGCAAAGGAGAAACATTTCCTTGTTGTGAACCAGCAG AAAACAGACTTTGAGGTCTTGGTGTCATTCAAGGTAGGAGCTACAAGTATGTCTGTTTTGCGCAGCGTGTGGCAGACTTATTGGTTACATGAAAACTGGA AAAGTTTTGACAACCGCAGTTCTGATACTGACTATGATCAGCTTGCACAAAGCCTACTGGAAATGGAGGTTAAGTTTGAGGATTTCATGCAGCAGCTAGA TGCAGTTGGATGGGATACAAGTCAAATAAATCTGAAGGTCCCTCGAAAAATCTCCATTGAAGAATTGGGTCCTGTTTGA
AA sequence Show only first row Show all	>Potri.006G099700.1 pacid=42767463 polypeptide=Potri.006G099700.1.p locus=Potri.006G099700 ID=Potri.006G099700.1.v4.1 annot-version=v4.1 MSYPLQLSFPGLAFESSKTRTRKKAHHFQTLCCSSLQHPSLQEKPDNEVILLERYGNGTAKRYTLDDAVQLQGFLEKNGSENRSFEESRLSEAGLSWLPD ILKDFILPAGFPGSVSDDYLQYMVLQFPTNITGWICHTLVTSSLLKAVGAGSFTGTDAAASAAAIRWVSKDGIGALGRLFIGGRFGDLFDDDPKQWRMYA DFIGSAGSIFDLTTQVYPAYFLPLASLGNLTKAVARGLKDPSFRVIQNHFAVSGNLGEVAAKEEVWEVGAQLLGLALGILILDTPDLVKSFPLLTSTWMS MRLLHLWLRYQSLSVLRFDTINLKRARILIKSHILQSRVLGCVDCNQDENILSWETFTRPRIIFGVPLEEMIGGERSVAKIKMLLKLYAKEKHFLVVNQQ KTDFEVLVSFKVGATSMSVLRSVWQTYWLHENWKSFDNRSSDTDYDQLAQSLLEMEVKFEDFMQQLDAVGWDTSQINLKVPRKISIEELGPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	0	1
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220201 [exp]	6.00	0.8499
AT1G05430			unknown protein		Potri.008G154200 [exp]	9.59	0.8151
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	10.95	0.8599
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Potri.005G173100 [exp]	11.13	0.7997	SDG944,SDG37.1
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	16.34	0.8499	SYN2.1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G054900 [exp]	19.59	0.8362
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	20.71	0.8257
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.016G142500 [exp]	22.18	0.8059
AT2G03670		CDC48B	cell division cycle 48B (.1)		Potri.001G128700 [exp]	22.73	0.8043	Pt-CDC48.1
					Potri.007G114901 [exp]	24.00	0.8221

Compare expression of checked genes

Potri.006G099700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.